View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8529_high_2 (Length: 270)
Name: NF8529_high_2
Description: NF8529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8529_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 32730418 - 32730167
Alignment:
| Q |
3 |
agaaattttaaaaatataaatcacattaattaatttttgactttgtgatcaacataaatatatgattagaaataatctagaactaaaccagttgaaatga |
102 |
Q |
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| T |
32730418 |
agaaattttaaaaatataaatcacattaattaatttttgactttgtgatcaacataaatatatgattagaaataatctagaactaaaccagttgaaatga |
32730319 |
T |
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| Q |
103 |
ttgaatgctgaacggagatcttggttgatgttgaaatgtcaatcccatcggtgttgggactatcctttggagcaattatatgaagattagagattaaagc |
202 |
Q |
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| T |
32730318 |
ttgaatgctgaacggagatgttggttgatgttgaaatgtcaatcccatcggtgttgggactatcctttggagcaattatatgaagattagagattaaagc |
32730219 |
T |
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| Q |
203 |
gtcattgcatccaactatacttatatgatttctggggctgttgatgtgtttc |
254 |
Q |
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| T |
32730218 |
gtcattgcatccgactatacttatatgatttctggggctgttgatgtgtttc |
32730167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 38090182 - 38090062
Alignment:
| Q |
123 |
ttggttgatgttgaaatgtcaatcccatcggtgttgggactatcctttggagcaattatatgaagattagagattaaagcgtcattgcatccaactatac |
222 |
Q |
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| T |
38090182 |
ttggttgatcttgaaatatcaattccatcggtgttgggactattctccggtgcaattatatgaagatgggagattaaagcgccattgcaatcgactatgc |
38090083 |
T |
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| Q |
223 |
ttatatgatttctggggctgt |
243 |
Q |
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| T |
38090082 |
ttatatgattttttgggctgt |
38090062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 19057292 - 19057401
Alignment:
| Q |
141 |
tcaatcccatcggtgttgggactatcctttggagcaattatatgaagattagagattaaagcgtcattgcatccaactatacttatatgatttctggggc |
240 |
Q |
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||||||||||| ||||| ||||||| | || |||||||| |||||||| ||||| |||||| |||||| | ||||||||||||||||||| |||| |
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| T |
19057292 |
tcaatcccatcagtgtttggactattttcgggcgcaattatctgaagattggagatggaagcgtttttgcatgaatctatacttatatgatttcttgggc |
19057391 |
T |
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| Q |
241 |
tgttgatgtg |
250 |
Q |
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|||| ||||| |
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| T |
19057392 |
tgttaatgtg |
19057401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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