View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8529_high_3 (Length: 244)

Name: NF8529_high_3
Description: NF8529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8529_high_3
NF8529_high_3
[»] chr2 (15 HSPs)
chr2 (1-228)||(32786526-32786753)
chr2 (1-228)||(32306389-32306616)
chr2 (1-214)||(32310533-32310746)
chr2 (1-214)||(32564074-32564287)
chr2 (1-214)||(32813737-32813950)
chr2 (1-212)||(28221983-28222194)
chr2 (4-212)||(28214093-28214301)
chr2 (1-104)||(32792909-32793012)
chr2 (11-210)||(28177383-28177587)
chr2 (1-62)||(32799577-32799638)
chr2 (11-119)||(28158816-28158924)
chr2 (146-210)||(28158724-28158788)
chr2 (146-210)||(28169293-28169357)
chr2 (172-210)||(28183168-28183206)
chr2 (146-210)||(32317504-32317567)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32786526 - 32786753
Alignment:
Q  1 caacataactcttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 100  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32786526 caacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 32786625  T
Q  101 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32786626 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatg 32786725  T
Q  201 acatccctttgtcactactagaatgatg 228  Q
    |||||||||||||||||||||| |||||    
T  32786726 acatccctttgtcactactagagtgatg 32786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32306616 - 32306389
Alignment:
Q  1 caacataactcttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 100  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32306616 caacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 32306517  T
Q  101 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatg 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32306516 tcagaaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaatatgctccagatggcactgcagatgacaatgcttgcatgtatg 32306417  T
Q  201 acatccctttgtcactactagaatgatg 228  Q
    |||||||||||||||||||||| |||||    
T  32306416 acatccctttgtcactactagagtgatg 32306389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 32310746 - 32310533
Alignment:
Q  1 caacataactcttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 100  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310746 caacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 32310647  T
Q  101 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310646 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatg 32310547  T
Q  201 acatccctttgtca 214  Q
    ||||||||||||||    
T  32310546 acatccctttgtca 32310533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 32564074 - 32564287
Alignment:
Q  1 caacataactcttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 100  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32564074 caacataacccttgcgaaatccatccgaaaggtagatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 32564173  T
Q  101 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  32564174 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaaaatgctccagatggaactgcagatgacaatgcttgcatgtatg 32564273  T
Q  201 acatccctttgtca 214  Q
    ||||||||||||||    
T  32564274 acatccctttgtca 32564287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 32813737 - 32813950
Alignment:
Q  1 caacataactcttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 100  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32813737 caacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcaaaaaccaatctggcagtcttctcttgagccatcagctgttga 32813836  T
Q  101 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32813837 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggtactgcagatgacaatgcttgcatgtatg 32813936  T
Q  201 acatccctttgtca 214  Q
    ||||||||||||||    
T  32813937 acatccctttgtca 32813950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 28222194 - 28221983
Alignment:
Q  1 caacataactcttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 100  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  28222194 caacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcaaaaaccaatatggcagtcttctcttaagccatcagctgttga 28222095  T
Q  101 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  28222094 tcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatg 28221995  T
Q  201 acatccctttgt 212  Q
    ||||||||||||    
T  28221994 acatccctttgt 28221983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 28214093 - 28214301
Alignment:
Q  4 cataactcttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatca 103  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  28214093 cataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatca 28214192  T
Q  104 gcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgaca 203  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  28214193 gcaaacaataaccctcttcctctcaacaatctctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgaca 28214292  T
Q  204 tccctttgt 212  Q
    |||||||||    
T  28214293 tccctttgt 28214301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32792909 - 32793012
Alignment:
Q  1 caacataactcttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 100  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32792909 caacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttga 32793008  T
Q  101 tcag 104  Q
    ||||    
T  32793009 tcag 32793012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 28177587 - 28177383
Alignment:
Q  11 cttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaaca 110  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||| |||||||| ||| || ||| |  |||||  ||||||||||||||||| ||| ||||    
T  28177587 cttgcaaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaacctagcactgctctctccagccatcagctgttgattagcgaaca 28177488  T
Q  111 ata-----accctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatc 205  Q
     ||      |||||||||||| || |||||| ||||  |   ||||||||| ||||||  ||||| ||||||||||||||| |||||||||  |||||||    
T  28177487 gtagccctcccctcttcctcttaataaactcggatatcatcaagtgtcaaatgatgcttaagatgacactgcagatgacaacgcttgcatgcctgacatc 28177388  T
Q  206 ccttt 210  Q
     ||||    
T  28177387 acttt 28177383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32799577 - 32799638
Alignment:
Q  1 caacataactcttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaa 62  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  32799577 caacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa 32799638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 28158924 - 28158816
Alignment:
Q  11 cttgcgaaatccatccggaaggtcgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaaca 110  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||| |||||||| |||||| ||||| ||||||  |||||| |||||||||| ||| ||||    
T  28158924 cttgccaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaatctagcagtgttctctccagccatgagctgttgattagcgaaca 28158825  T
Q  111 ataaccctc 119  Q
     || |||||    
T  28158824 gtagccctc 28158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 28158788 - 28158724
Alignment:
Q  146 tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt 210  Q
    ||||||||||| |||||| |||||| ||||||||| |||||  |||||||| |||||||| ||||    
T  28158788 tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt 28158724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 28169357 - 28169293
Alignment:
Q  146 tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt 210  Q
    ||||||||||| |||||| |||||| ||||||||| |||||  |||||||| |||||||| ||||    
T  28169357 tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt 28169293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 28183206 - 28183168
Alignment:
Q  172 cactgcagatgacaatgcttgcatgtatgacatcccttt 210  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  28183206 cactgcagatgacaacgcttccatgtatgacatcccttt 28183168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 32317567 - 32317504
Alignment:
Q  146 tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt 210  Q
    |||||||||||||||| |  ||||||||||||| ||||||| ||||||  |||||| ||||||||    
T  32317567 tgagtgtcaaaagatgtta-agatggcactgcatatgacaaagcttgcgcgtatgatatcccttt 32317504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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