View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8529_low_1 (Length: 587)
Name: NF8529_low_1
Description: NF8529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8529_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Original strand, 32266460 - 32267024
Alignment:
| Q |
18 |
gtttctcaagctttgacagaactcaaccttatgagtacggagctagggcaaattgctttatcttcagcaatgatcactgaaatgatgcaatgggttacga |
117 |
Q |
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| T |
32266460 |
gtttctcaagctttgacagaactcaaccttatgagtacggagctagggcaaattgctttatcttcagcaatgatcactgaaatgatgcaatgggttacga |
32266559 |
T |
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| Q |
118 |
taacactacaaatacaagtcaaaactatgaagtttaaaaatatcttttttgcgttcattgccttgggtttatgcgtcgtatatattttatccttcttttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
32266560 |
taacactacaaatacaagtcaaaactatgaagtttaaaaatatcttttttgcgttcattgccttgggtttatgtgtcttatatattttatccttcttttt |
32266659 |
T |
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| Q |
218 |
cattgtaagaccaatggcaaggtttatcattcaaagaacaccaattggaaaacctttgaaagaaatttatgttgtctttgttcttttgggtgttctaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32266660 |
cattgtaagaccaatggcaaggtttatcattcaaagaacaccaattggaaaacctttgaaagaaatctatgttgtctttgttcttttgggtgttctaatt |
32266759 |
T |
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| Q |
318 |
atggtagctattagcgacgcgcttggtttacattttgttataggacctattctttttggtttggcaatgcctaatggacctcccttggcaacaacgatag |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32266760 |
atggtagctattagcgacgcgcttggtttacattttgttataggacctattctttttggtttggcaatgcctaatggacctcccttggcaacaacaatag |
32266859 |
T |
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| Q |
418 |
tagagaaaagtgaactaatcgtccaagaattgcttatgccatttttcttctcatacattggcataacaacaaatttaaaaggaattgccaaaaattggaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266860 |
tagagaaaagtgaactaatcgtccaagaattgcttatgccatttttcttctcatacattggcataacaacaaatttaaaaggaattgccaaaaattggaa |
32266959 |
T |
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| Q |
518 |
ggtggtgtttgtatttcagagtatcttatttgttgggttcttggcaaaggttcttgcatgcgtct |
582 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266960 |
ggtggtatttgtatttcagagtatcttatttgttgggttcttggcaaaggttcttgcatgcgtct |
32267024 |
T |
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