View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8529_low_2 (Length: 501)
Name: NF8529_low_2
Description: NF8529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8529_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 10559785 - 10559301
Alignment:
| Q |
1 |
tatggtagagttatatgtgtataaggaaagctgatttattataaggtaactctctaacctaaagtgtaggtggtatcattcaaaatagctacaaccacaa |
100 |
Q |
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| T |
10559785 |
tatggtagagttatatgtgtataaggaaagctgatttattataaggtaactctctaacctaaagtgtaggtggtatcattcaaaatagctacaaccacaa |
10559686 |
T |
|
| Q |
101 |
actttattatcttgaattatgcattacatatgaagccaggcctttccacataaactatgaa-tttaagcaacaacttaggtaacacaggacataatttag |
199 |
Q |
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| T |
10559685 |
actttattatcttgaattatgcattacatatgaagccaggcctttccacataaactatgaaatttaagcaacaacttaggtaacacaggacataatttag |
10559586 |
T |
|
| Q |
200 |
aacaataaactatcatcaaccacaatgaagtatgaaccaaatcaaaattcaaagctttgacagttccacagggtgaactacaacaatataattataggca |
299 |
Q |
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| T |
10559585 |
aacaataaactatcatcaaccacaatgaagtatgaaccaaatcaaaattcaaagctttgacagttccacagggtgaactacaacaatataattataggca |
10559486 |
T |
|
| Q |
300 |
tcaagagtgagaaaatcatcaagtgttggtgaagtgcattgcctagtgaaaatcttgcaagcatccttatacattcccttcgtgaacttatcttttccaa |
399 |
Q |
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| T |
10559485 |
tcaagagtgagaaaatcatcaagtgttggtgaagtgcattgcctagtgaaaatcttgcaagcatccttatacattcccttcttgaacttatcttttccaa |
10559386 |
T |
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| Q |
400 |
cctctttttcaatcctatccatctcttcttcaacaactctaccaaatagttctttactcactttcactccaagtccatcaccatc |
484 |
Q |
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| T |
10559385 |
cctctttttcaatcctatccatctcttcttcaacaactctaccaaatagttctttactcactttcactccaagtccatcaccatc |
10559301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 10560592 - 10560482
Alignment:
| Q |
172 |
aacttaggtaacacaggacataatttagaacaataaactatcatcaaccac------aatgaagtatgaaccaaatcaaaattcaaagctttgacagttc |
265 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
10560592 |
aacttaggtaacacaggacataatttaaaacaataaactatcatcaaccacaaatataatgaagtataaaccaaatcataattcaaagctttgactgttc |
10560493 |
T |
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| Q |
266 |
cacagggtgaa |
276 |
Q |
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| T |
10560492 |
cacagagtgaa |
10560482 |
T |
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