View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8529_low_3 (Length: 464)
Name: NF8529_low_3
Description: NF8529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8529_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 30239627 - 30240071
Alignment:
| Q |
1 |
aaaaaataatctgaccgatgaaaatgtttcattttgtttggacttggttnnnnnnntggtcagaatcagagcacttccatgagcactaaaaatcccacaa |
100 |
Q |
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| T |
30239627 |
aaaaaataatctgaccgatgaaaatgtttcattttgtttggacttggttaaaaaaatggtcagaatcagagcacttccatgagcactaaaaatcccacaa |
30239726 |
T |
|
| Q |
101 |
tatggaccatttgagcagaatattaaatgcagtgtagaaataaatggagcttgtgaagagaatgaaccagaagagtagttattattcaaatattggagcc |
200 |
Q |
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| T |
30239727 |
tatggaccatttgagcagaatattaaatgcaatgtagaaataaatggagcctgtgaagagaatgaaccagaagagtagttattattcaaatattggagcc |
30239826 |
T |
|
| Q |
201 |
aataggtatgagtttgtgacattttggtgt--ggatggatggaaccttgtggtccaaaccccattcacccaattcgcagtggattacaggtagggtggtg |
298 |
Q |
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|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30239827 |
aataggtatgagtttgtgacattttggttttggtgtggatggaaccttgtggtccaaaccccattcacccaattcgcagtggattacaggtagggtggtg |
30239926 |
T |
|
| Q |
299 |
atcataacccctatgagtgttttctactatgatatagaaggggacattattgatgaatataataatattatcacattcttcgatccactggcaatggcga |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
30239927 |
atcataacccctatgagtgttttctactatgatatagaaggggacattattgatgaatataataa---tatcacattcttcaatccactggcaatggcga |
30240023 |
T |
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| Q |
399 |
tggatatagtaagttatattagaactttatcttccacttataatcattc |
447 |
Q |
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| T |
30240024 |
tggatatagtaagttatactagaactttatcttccactt-taatcattc |
30240071 |
T |
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