View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8529_low_4 (Length: 339)

Name: NF8529_low_4
Description: NF8529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8529_low_4
NF8529_low_4
[»] chr6 (8 HSPs)
chr6 (38-331)||(877106-877399)
chr6 (178-316)||(24737580-24737718)
chr6 (178-310)||(33346266-33346398)
chr6 (179-255)||(18611228-18611304)
chr6 (178-255)||(29157264-29157341)
chr6 (182-239)||(34399683-34399740)
chr6 (190-255)||(15034920-15034990)
chr6 (178-215)||(35119273-35119310)
[»] chr1 (11 HSPs)
chr1 (162-310)||(179630-179778)
chr1 (178-316)||(18056822-18056960)
chr1 (180-310)||(22348079-22348209)
chr1 (179-306)||(23319984-23320111)
chr1 (179-310)||(8402206-8402337)
chr1 (178-310)||(45889634-45889766)
chr1 (181-279)||(30802437-30802535)
chr1 (179-255)||(37639381-37639457)
chr1 (179-255)||(35198131-35198207)
chr1 (178-255)||(16115889-16115966)
chr1 (168-200)||(10497314-10497346)
[»] chr8 (13 HSPs)
chr8 (178-316)||(32987334-32987472)
chr8 (178-316)||(8550542-8550682)
chr8 (178-310)||(4836596-4836728)
chr8 (178-310)||(4842041-4842173)
chr8 (178-310)||(7058152-7058284)
chr8 (178-310)||(39022013-39022145)
chr8 (178-310)||(15260746-15260878)
chr8 (179-279)||(7614107-7614207)
chr8 (216-310)||(2750101-2750195)
chr8 (179-255)||(15181830-15181906)
chr8 (268-316)||(1208829-1208877)
chr8 (178-236)||(1208747-1208805)
chr8 (283-316)||(39658430-39658463)
[»] scaffold0097 (1 HSPs)
scaffold0097 (178-316)||(13651-13789)
[»] chr4 (16 HSPs)
chr4 (178-316)||(637892-638030)
chr4 (178-310)||(27764278-27764410)
chr4 (178-311)||(26447306-26447439)
chr4 (178-316)||(4168396-4168536)
chr4 (182-310)||(21097182-21097310)
chr4 (178-310)||(22181140-22181272)
chr4 (178-310)||(45256013-45256145)
chr4 (180-310)||(51836985-51837116)
chr4 (178-310)||(38485567-38485701)
chr4 (178-279)||(36621627-36621728)
chr4 (232-316)||(18923351-18923435)
chr4 (179-255)||(50563679-50563755)
chr4 (179-227)||(6386519-6386567)
chr4 (209-252)||(48077817-48077860)
chr4 (178-216)||(1729604-1729642)
chr4 (168-200)||(49138087-49138119)
[»] chr3 (14 HSPs)
chr3 (178-316)||(50754044-50754182)
chr3 (178-310)||(52987545-52987677)
chr3 (178-310)||(51362334-51362465)
chr3 (182-310)||(7045196-7045323)
chr3 (178-308)||(39099235-39099365)
chr3 (178-308)||(19385212-19385342)
chr3 (181-310)||(8718142-8718271)
chr3 (181-310)||(9070029-9070158)
chr3 (178-277)||(16277342-16277441)
chr3 (179-255)||(23699367-23699443)
chr3 (179-255)||(23717822-23717898)
chr3 (179-255)||(23736278-23736354)
chr3 (178-226)||(17627210-17627258)
chr3 (210-255)||(23755349-23755394)
[»] chr2 (10 HSPs)
chr2 (178-316)||(20709812-20709950)
chr2 (178-310)||(18298006-18298138)
chr2 (178-310)||(25192930-25193062)
chr2 (182-255)||(4281738-4281811)
chr2 (179-255)||(25995326-25995402)
chr2 (268-310)||(4579721-4579763)
chr2 (178-236)||(14551288-14551346)
chr2 (179-236)||(4579787-4579844)
chr2 (181-232)||(36636910-36636961)
chr2 (179-227)||(5098756-5098804)
[»] chr7 (14 HSPs)
chr7 (178-316)||(30428911-30429049)
chr7 (182-308)||(46573397-46573523)
chr7 (178-316)||(46024065-46024205)
chr7 (178-310)||(15974831-15974963)
chr7 (178-279)||(33797969-33798070)
chr7 (178-255)||(5757425-5757502)
chr7 (179-255)||(32090617-32090693)
chr7 (167-236)||(48691020-48691088)
chr7 (178-236)||(48690933-48690991)
chr7 (268-310)||(48305356-48305398)
chr7 (268-310)||(48691112-48691154)
chr7 (179-227)||(44141229-44141277)
chr7 (268-310)||(28396842-28396884)
chr7 (177-205)||(32090587-32090615)
[»] chr5 (12 HSPs)
chr5 (178-316)||(2826956-2827094)
chr5 (178-306)||(13362808-13362936)
chr5 (178-310)||(23335601-23335734)
chr5 (178-301)||(28070057-28070180)
chr5 (179-256)||(16668743-16668820)
chr5 (178-316)||(25017121-25017244)
chr5 (239-310)||(42512273-42512344)
chr5 (179-255)||(18465506-18465582)
chr5 (178-236)||(34329165-34329223)
chr5 (180-255)||(8948930-8949003)
chr5 (268-316)||(34329247-34329293)
chr5 (178-206)||(42512237-42512265)
[»] scaffold0194 (1 HSPs)
scaffold0194 (178-316)||(27645-27785)
[»] scaffold0238 (1 HSPs)
scaffold0238 (178-289)||(25148-25259)
[»] scaffold0337 (1 HSPs)
scaffold0337 (178-227)||(7055-7104)
[»] scaffold0544 (1 HSPs)
scaffold0544 (178-227)||(10653-10702)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 38 - 331
Target Start/End: Original strand, 877106 - 877399
Alignment:
Q  38 caaacctcatttttatttattgataactttagtagatgtgatttatttttagtagatgtggatatatgtgtatgattatagatctttgaatgagttcaag 137  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  877106 caaacctcatttttatttattgataaatttagtagatgtgatttatttttagtagatgtggatatatgtgtatgattatagatctttgaatgagttcaag 877205  T
Q  138 tctcggtcaacccaactaggttgacacggcaaaagttatggtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttct 237  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  877206 tctcggtcaacccaactaggttgacacagaaaaagttatggtgcataaacacttcacaaccattagatcaggtgtacacgtataataatcataagcttct 877305  T
Q  238 caaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaacaaaaagctctccctctctctacaattaggagtcttcatctc 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  877306 caaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaacaaaaagctctccctctctctacaattaggagtcttcatctc 877399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 178 - 316
Target Start/End: Complemental strand, 24737718 - 24737580
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||    
T  24737718 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgcttcaaacattt 24737619  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  24737618 ctctcactaaaacataaaactctccctctctctacaatt 24737580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 33346398 - 33346266
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||| ||| ||||||||||||||  ||||||||||||| ||||||||||||||||    
T  33346398 gtgcataaacacttcacaaccatcaaatctagtgtacacgtgtaataattataggcttctcaaactacgtcaaatcaaacttcgtttgcttcaaacattt 33346299  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| |||| |||||||||||||    
T  33346298 ctctcactaaaacataaagttctccctctctct 33346266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 18611228 - 18611304
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  18611228 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaaccacaccaaatcaa 18611304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 29157264 - 29157341
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||||  || ||||||||||||||||||||||||    
T  29157264 gtgcataaacactttacaaccatcagatctagtgtacacgtgtaataatactaggcttctcaaactacaccaaatcaa 29157341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 34399683 - 34399740
Alignment:
Q  182 ataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctca 239  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||| || ||||||||    
T  34399683 ataaacacttcacaatcatcagatctagtgtacacgtgtaataatcctaggcttctca 34399740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 15034990 - 15034920
Alignment:
Q  190 ttcacaaccatcagatcaggtgtacacgtgtaataatcataagct-----tctcaaactacaccaaatcaa 255  Q
    |||||||||||||||||  ||||||| |||||||||||||| |||     |||||||||||||||||||||    
T  15034990 ttcacaaccatcagatctagtgtacatgtgtaataatcataggcttctcctctcaaactacaccaaatcaa 15034920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 35119273 - 35119310
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtaca 215  Q
    |||||||||||||||||||||||||||||  |||||||    
T  35119273 gtgcataaacacttcacaaccatcagatctagtgtaca 35119310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 162 - 310
Target Start/End: Original strand, 179630 - 179778
Alignment:
Q  162 cacggcaaaagttatggtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttca 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  179630 cacggcaaaagttatggtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcccaagcttctcaaactacaccaaatcaaacttca 179729  T
Q  262 tttgcttcaaacatttctctcactaaaacaaaaagctctccctctctct 310  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  179730 tttgcttaaaacatttctctcactaaaacataaagctctccctctctct 179778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 18056822 - 18056960
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  18056822 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 18056921  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  18056922 ctctcactaaaacataaaactctccctctctctacaatt 18056960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 180 - 310
Target Start/End: Original strand, 22348079 - 22348209
Alignment:
Q  180 gcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttct 279  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22348079 gcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttct 22348178  T
Q  280 ctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||| ||||||||||||||||||    
T  22348179 ctcactaaaacataaagctctccctctctct 22348209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 179 - 306
Target Start/End: Complemental strand, 23320111 - 23319984
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttc 278  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| |||||||||    
T  23320111 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgctttaaacatttc 23320012  T
Q  279 tctcactaaaacaaaaagctctccctct 306  Q
    ||||||||||||| |||||| |||||||    
T  23320011 tctcactaaaacataaagctatccctct 23319984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 8402337 - 8402206
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttc 278  Q
    ||||||||||||||| ||||||||||||  |||||||| |||||||||| || | ||||||||||| ||||||||||||||||| |||||||||||||||    
T  8402337 tgcataaacacttcataaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactaaaccaaatcaaacttcatctgcttcaaacatttc 8402238  T
Q  279 tctcactaaaacaaaaagctctccctctctct 310  Q
    ||||||||||||| ||||||||| ||||||||    
T  8402237 tctcactaaaacataaagctctctctctctct 8402206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 45889634 - 45889766
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||| || ||||||||||||||  || |||| ||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  45889634 gtgcataaacattttacaaccatcagatctagtatacatgtgtaataatcttaggcttctcaaactacaccaaatcaaatttcatttccttcaaacattt 45889733  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| |||| |||||||||||||    
T  45889734 ctctcactaaaacataaagttctccctctctct 45889766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 30802437 - 30802535
Alignment:
Q  181 cataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttct 279  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30802437 cataaacatttcacaaccatcagatctagtgtacacgtgtaataatcttaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttct 30802535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 37639381 - 37639457
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| |||  |||||||||||||||||||||||    
T  37639381 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattatagacttctcaaactacaccaaatcaa 37639457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 35198207 - 35198131
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||||| ||  ||| ||||||||||| |||||||    
T  35198207 tgcataaacacttcacagccatcagatctagtgtacacgtgtaataatcctagacttttcaaactacacaaaatcaa 35198131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 16115889 - 16115966
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    ||||||||||||||||||||||||| |||   ||||||||||||||||||  |  ||||| |||||||||||||||||    
T  16115889 gtgcataaacacttcacaaccatcaaatctaatgtacacgtgtaataatccaagacttcttaaactacaccaaatcaa 16115966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 10497314 - 10497346
Alignment:
Q  168 aaaagttatggtgcataaacacttcacaaccat 200  Q
    ||||||||||||| |||||||||||||||||||    
T  10497314 aaaagttatggtggataaacacttcacaaccat 10497346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 178 - 316
Target Start/End: Complemental strand, 32987472 - 32987334
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  32987472 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 32987373  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  32987372 ctctaactaaaacataaagctctccctctctctacaatt 32987334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 8550542 - 8550682
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8550542 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcataagcttctcaaattacaccaaatcaaacttcatttgcttcaaacattt 8550641  T
Q  278 ctctcactaaaacaaaaagctctccctc--tctctacaatt 316  Q
    |||||||||||||| |||| ||||||||  |||||||||||    
T  8550642 ctctcactaaaacataaagttctccctctttctctacaatt 8550682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 4836728 - 4836596
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4836728 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgcttcaaacattt 4836629  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
     ||||||||||||| ||||||||||||||||||    
T  4836628 atctcactaaaacataaagctctccctctctct 4836596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 4842173 - 4842041
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4842173 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgcttcaaacattt 4842074  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
     ||||||||||||| ||||||||||||||||||    
T  4842073 atctcactaaaacataaagctctccctctctct 4842041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 7058152 - 7058284
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||| ||    
T  7058152 gtgcataaacacttcacaaccatccgatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgcttcaaacactt 7058251  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| ||||||||||||||||||    
T  7058252 ctctcactaaaacataaagctctccctctctct 7058284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 39022013 - 39022145
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||| |||||||||  ||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  39022013 gtgcataaacacttcacaatcatcagatctagtgtacatgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 39022112  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
     ||||||||||||| ||||||||||||||||||    
T  39022113 atctcactaaaacataaagctctccctctctct 39022145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 15260878 - 15260746
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||||||||| |||  |||||||||| ||||||||  | ||||||||||||||||||||||||||||||||||||||||| ||||    
T  15260878 gtgcataaacacttcacaaccatcaaatctagtgtacacgtttaataatccaaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatattt 15260779  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||| | ||| ||||||||||||||    
T  15260778 ctctcactaaaatataaaactctccctctctct 15260746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 7614107 - 7614207
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttc 278  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7614107 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttc 7614206  T
Q  279 t 279  Q
    |    
T  7614207 t 7614207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 2750101 - 2750195
Alignment:
Q  216 cgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||| ||||    
T  2750101 cgtgtaataatcatagacttctcaaactacaccaaatcaaacttcatttactttaaacatttctctcactaaaacataatgctctccctcactct 2750195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 15181830 - 15181906
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||||| || | ||||||||||||||||||||||    
T  15181830 tgcataaacacttcacaagcatcagatctagtgtacacgtgtaataatcttaggtttctcaaactacaccaaatcaa 15181906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 1208829 - 1208877
Alignment:
Q  268 tcaaacatttctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1208829 tcaaacatttctctcactaaaacataaagctctccctctctctacaatt 1208877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 1208747 - 1208805
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttc 236  Q
    |||||||||||||| |||||||| |||||  ||||||||||||||||||| || |||||    
T  1208747 gtgcataaacactttacaaccataagatctagtgtacacgtgtaataatcctaggcttc 1208805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Complemental strand, 39658463 - 39658430
Alignment:
Q  283 actaaaacaaaaagctctccctctctctacaatt 316  Q
    ||||||||| ||||||||||||||||||||||||    
T  39658463 actaaaacataaagctctccctctctctacaatt 39658430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 13651 - 13789
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  13651 gtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 13750  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  13751 ctctcactaaaacataaagttctccctctctctacaatt 13789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 637892 - 638030
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||    
T  637892 gtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataattttaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 637991  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  637992 ctctcactaaaacataaagctctccctctctctacaatt 638030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 27764278 - 27764410
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||||||||||    
T  27764278 gtgcataaacacttcgcaaccatcagatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaaccttatttgcttcaaacattt 27764377  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| |||| |||||||||||||    
T  27764378 ctctcactaaaacataaagttctccctctctct 27764410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 26447439 - 26447306
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||  || ||||| |||| |||||||||||||| ||||||||||||||||||||    
T  26447439 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattctaggcttcacaaattacaccaaatcaaatttcatttgcttcaaacattt 26447340  T
Q  278 ctctcactaaaacaaaaagctctccctctctcta 311  Q
    |||||||||||||| |||| ||||||||||||||    
T  26447339 ctctcactaaaacataaagttctccctctctcta 26447306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 4168396 - 4168536
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||    
T  4168396 gtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttgtttcaaacattt 4168495  T
Q  278 ctctcactaaaacaaaaagctctccctc--tctctacaatt 316  Q
    |||||||||||||| |||||| || |||  |||||||||||    
T  4168496 ctctcactaaaacataaagctttcactctatctctacaatt 4168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 21097182 - 21097310
Alignment:
Q  182 ataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctct 281  Q
    ||||||||||||||||||| |||||  || |||||||||||||||  ||||||| | ||| |||||||||||||||||||||||||||||||||||||||    
T  21097182 ataaacacttcacaaccattagatctagtttacacgtgtaataattctaagcttattaaattacaccaaatcaaacttcatttgcttcaaacatttctct 21097281  T
Q  282 cactaaaacaaaaagctctccctctctct 310  Q
    |||||||||| ||||||||||||||||||    
T  21097282 cactaaaacataaagctctccctctctct 21097310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 22181272 - 22181140
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||| ||||||||||||||||||   ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||||    
T  22181272 gtgcataaaaacttcacaaccatcagatttagtgtacacgtgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttgcctcaaacattt 22181173  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| |||||| | |||||||||    
T  22181172 ctctcactaaaacataaagcttttcctctctct 22181140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 45256013 - 45256145
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||    
T  45256013 gtgcataaacacttcacaactatcagatatagtgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaaacttcatttgcttcaaacattt 45256112  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| ||||||| ||| ||||||    
T  45256113 ctctcactaaaacataaagctccccccctctct 45256145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 180 - 310
Target Start/End: Complemental strand, 51837116 - 51836985
Alignment:
Q  180 gcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttca-tttgcttcaaacatttc 278  Q
    ||||||| ||||||||||||||||||    |||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  51837116 gcataaatacttcacaaccatcagatttaatgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattttacttcaaacatttc 51837017  T
Q  279 tctcactaaaacaaaaagctctccctctctct 310  Q
    ||||||||||||| ||||||||||||||||||    
T  51837016 tctcactaaaacataaagctctccctctctct 51836985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 38485701 - 38485567
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||| ||||||||||||||||||   |||||||||||||||||| || |||||||||| ||||  |||||||||||||||||||||||||||||    
T  38485701 gtgcataaacgcttcacaaccatcagatctaatgtacacgtgtaataatcctaggcttctcaaaatacattaaatcaaacttcatttgcttcaaacattt 38485602  T
Q  278 ctctcact--aaaacaaaaagctctccctctctct 310  Q
    ||||||||  |||||| |||| |||||||||||||    
T  38485601 ctctcactaaaaaacataaagatctccctctctct 38485567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 36621728 - 36621627
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||    
T  36621728 gtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctatgcttcttaaactacaccaaatcaaacttcatttgcttcaaacattt 36621629  T
Q  278 ct 279  Q
    ||    
T  36621628 ct 36621627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 18923351 - 18923435
Alignment:
Q  232 gcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| || |||||||||||||||||    
T  18923351 gcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttctgtcactaaaacataaaactatccctctctctacaatt 18923435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 50563755 - 50563679
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||| | ||||||||||||||||||||||    
T  50563755 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattataggtttctcaaactacaccaaatcaa 50563679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 6386567 - 6386519
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatc 227  Q
    |||||||||||||||||||||||||||   ||| |||||||||||||||    
T  6386567 tgcataaacacttcacaaccatcagatttagtggacacgtgtaataatc 6386519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 48077860 - 48077817
Alignment:
Q  209 gtgtacacgtgtaataatcataagcttctcaaactacaccaaat 252  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  48077860 gtgtacatgtgtaataatcctaggcttctcaaactacaccaaat 48077817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 1729642 - 1729604
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacac 216  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  1729642 gtgcataaacacttcacaaccatcagatctagtgtacac 1729604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 49138119 - 49138087
Alignment:
Q  168 aaaagttatggtgcataaacacttcacaaccat 200  Q
    |||||||| ||||||||||||||||||||||||    
T  49138119 aaaagttacggtgcataaacacttcacaaccat 49138087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 50754044 - 50754182
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| ||    
T  50754044 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgattcaaacactt 50754143  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  50754144 ctctcactaaaacataaagctctccctctctctacaatt 50754182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 52987677 - 52987545
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||    
T  52987677 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatattt 52987578  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| ||||||||||||||||||    
T  52987577 ctctcactaaaacataaagctctccctctctct 52987545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 51362465 - 51362334
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  51362465 gtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 51362366  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| ||| || |||||||||||    
T  51362365 ctctcactaaaacataaa-ctttccctctctct 51362334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 7045323 - 7045196
Alignment:
Q  182 ataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctct 281  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| || |||||||| |||||| |||||||||||| |||||||||||||||||||||    
T  7045323 ataaacacttcacaaccatcagatctagtgtacacgtgtaataatcgtaggcttctcagactacatcaaatcaaactt-atttgcttcaaacatttctct 7045225  T
Q  282 cactaaaacaaaaagctctccctctctct 310  Q
    |||||||||| ||||||||||||||||||    
T  7045224 cactaaaacataaagctctccctctctct 7045196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 39099235 - 39099365
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||| | |||||||||||||||||  ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| || ||||||||    
T  39099235 gtgcataaatatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacactaaatcaaacttcatttgtttaaaacattt 39099334  T
Q  278 ctctcactaaaacaaaaagctctccctctct 308  Q
    |||||||||||||| ||||||||||||||||    
T  39099335 ctctcactaaaacataaagctctccctctct 39099365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 178 - 308
Target Start/End: Complemental strand, 19385342 - 19385212
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||  || ||||||||||||||| |||||||||||||||||||||||| |||||    
T  19385342 gtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataattctaggcttctcaaactacatcaaatcaaacttcatttgcttcaatcattt 19385243  T
Q  278 ctctcactaaaacaaaaagctctccctctct 308  Q
    | |||||||||||| ||| ||||||||||||    
T  19385242 ccctcactaaaacataaaactctccctctct 19385212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 8718142 - 8718271
Alignment:
Q  181 cataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctc 280  Q
    |||||| |||||||||||||||||||  ||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||| || |||||||||||    
T  8718142 cataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgtttaaaacatttctc 8718241  T
Q  281 tcactaaaacaaaaagctctccctctctct 310  Q
    ||||||||||| |||||| |||||||||||    
T  8718242 tcactaaaacataaagctttccctctctct 8718271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 9070029 - 9070158
Alignment:
Q  181 cataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctc 280  Q
    |||||| |||||||||||||||||||  ||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||| || |||||||||||    
T  9070029 cataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgtttaaaacatttctc 9070128  T
Q  281 tcactaaaacaaaaagctctccctctctct 310  Q
    ||||||||||| |||||| |||||||||||    
T  9070129 tcactaaaacataaagctttccctctctct 9070158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 16277441 - 16277342
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||    
T  16277441 gtgcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgtttcaaacattt 16277342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 23699367 - 23699443
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||||||||||||||||| |||   |||||||||||||||||| || |||| |||||||||| ||||||||    
T  23699367 tgcataaacacttcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23699443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 23717822 - 23717898
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||||||||||||||||| |||   |||||||||||||||||| || |||| |||||||||| ||||||||    
T  23717822 tgcataaacacttcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23717898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 23736278 - 23736354
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||||||||||||||||| |||   |||||||||||||||||| || |||| |||||||||| ||||||||    
T  23736278 tgcataaacacttcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23736354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 17627258 - 17627210
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataat 226  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  17627258 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataat 17627210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 23755349 - 23755394
Alignment:
Q  210 tgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||||||||||| || |||||||||| |||| ||||||||    
T  23755349 tgtacacgtgtaataatcctaggcttctcaaattacatcaaatcaa 23755394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 20709812 - 20709950
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  20709812 gtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 20709911  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  20709912 ctctcactaaaacataaagttctccctctctctacaatt 20709950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 18298138 - 18298006
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| | |||    
T  18298138 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaagcgttt 18298039  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| ||| ||||||||||||||    
T  18298038 ctctcactaaaacataaatctctccctctctct 18298006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 25192930 - 25193062
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||||||  || |||||||||| |||||||||||||||||||||||||||||||||||    
T  25192930 gtgcataaacacttcacaaccattagatctagtgtacacgtgtaataattctaggcttctcaaattacaccaaatcaaacttcatttgcttcaaacattt 25193029  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| ||||||||||||||||||    
T  25193030 ctctcactaaaacataaagctctccctctctct 25193062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 4281811 - 4281738
Alignment:
Q  182 ataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| || | ||||||||||||| ||||||||    
T  4281811 ataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggtttctcaaactacagcaaatcaa 4281738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 25995326 - 25995402
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||| ||||||||||||||||||   ||||||||||||||||||| || ||| |||||| |||||||||||||    
T  25995326 tgcataaatacttcacaaccatcagatttagtgtacacgtgtaataatcctaggctactcaaattacaccaaatcaa 25995402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 4579763 - 4579721
Alignment:
Q  268 tcaaacatttctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  4579763 tcaaacatttctctcactaaaacataaagctctccctctctct 4579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 14551346 - 14551288
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttc 236  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||||| || |||||    
T  14551346 gtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttc 14551288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 4579844 - 4579787
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttc 236  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||| || |||||    
T  4579844 tgcataaacactttacaaccatcagatctagtgtacacgtgtaataatcttatgcttc 4579787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 36636961 - 36636910
Alignment:
Q  181 cataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataag 232  Q
    |||||||||||||||||||||||||  | | |||||||||||||||| ||||    
T  36636961 cataaacacttcacaaccatcagatttgttttacacgtgtaataatcctaag 36636910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 5098756 - 5098804
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatc 227  Q
    |||||||||||||||||||||||| ||    ||||||||||||||||||    
T  5098756 tgcataaacacttcacaaccatcaaatttattgtacacgtgtaataatc 5098804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 30428911 - 30429049
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  30428911 gtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 30429010  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
     ||||||||||||| ||||||| ||||||||||||||||    
T  30429011 atctcactaaaacataaagctccccctctctctacaatt 30429049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 182 - 308
Target Start/End: Complemental strand, 46573523 - 46573397
Alignment:
Q  182 ataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctct 281  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46573523 ataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctct 46573424  T
Q  282 cactaaaacaaaaagctctccctctct 308  Q
    |||||||||| ||||||||||||||||    
T  46573423 cactaaaacataaagctctccctctct 46573397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 46024065 - 46024205
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||| ||  ||||||||||||||  |||||||||||||||||||||||| ||||    
T  46024065 gtgcataaacacttcacaaccatcagatatagtgtacacgtgtaataatcctagacttctcaaactacattaaatcaaacttcatttgcttcaaatattt 46024164  T
Q  278 ctctcactaaaacaaaaagctctccctc--tctctacaatt 316  Q
    |||||||||||||| |||| ||||||||  |||||||||||    
T  46024165 ctctcactaaaacataaagttctccctctatctctacaatt 46024205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 15974963 - 15974831
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||||||||| ||   |||||||| |||||||||| || |||| ||||| |||||||||||||||||||| ||||||||||||||    
T  15974963 gtgcataaacacttcacaaccatcatatttagtgtacacatgtaataatcttaggcttatcaaagtacaccaaatcaaacttcatctgcttcaaacattt 15974864  T
Q  278 ctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||| ||||||||| | ||||||    
T  15974863 ctctcactaaaacataaagctctctccctctct 15974831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 33797969 - 33798070
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||| |||||||||||||||||  || |||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||    
T  33797969 gtgcataaacatttcacaaccatcagatctagtatacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaacattt 33798068  T
Q  278 ct 279  Q
    ||    
T  33798069 ct 33798070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 5757425 - 5757502
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| ||  |||||||||||||||||||||||    
T  5757425 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaa 5757502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 32090617 - 32090693
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||| |||| |||||||| |||  || ||||||||||||||||||| ||||||||||||||||||||||||    
T  32090617 tgcataaacaattcagaaccatcaaatctagtatacacgtgtaataatcataggcttctcaaactacaccaaatcaa 32090693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 48691020 - 48691088
Alignment:
Q  167 caaaagttatggtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttc 236  Q
    ||||||||||| |||||| |||||||||||||||||||||  ||||||||||||||||||| || |||||    
T  48691020 caaaagttatg-tgcatagacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttc 48691088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 48690933 - 48690991
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttc 236  Q
    ||||||||||| ||||||||||||| |||  |||||||||||||||||||||| |||||    
T  48690933 gtgcataaacagttcacaaccatcaaatctagtgtacacgtgtaataatcataggcttc 48690991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 48305356 - 48305398
Alignment:
Q  268 tcaaacatttctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  48305356 tcaaacatttctctcaataaaacataaagctctccctctctct 48305398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 48691112 - 48691154
Alignment:
Q  268 tcaaacatttctctcactaaaacaaaaagctctccctctctct 310  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  48691112 tcaaaaatttctctcactaaaacataaagctctccctctctct 48691154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 44141277 - 44141229
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatc 227  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||||    
T  44141277 tgcataaacacttcacaaccatctgatttagtgtacacgtgtaataatc 44141229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 28396842 - 28396884
Alignment:
Q  268 tcaaacatttctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||||| ||||||| |||| |||||||||||||    
T  28396842 tcaaacatttctctcaataaaacataaagttctccctctctct 28396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 32090615 - 32090587
Alignment:
Q  177 ggtgcataaacacttcacaaccatcagat 205  Q
    |||||||||||||||||||||||||||||    
T  32090615 ggtgcataaacacttcacaaccatcagat 32090587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 178 - 316
Target Start/End: Complemental strand, 2827094 - 2826956
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  2827094 gtgcataaacactttacaaccatcagatctagtgtacacgtgtaattatcttaggcttctcaaactacaccaaatcaaatttcatttgcttcaaacattt 2826995  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
     ||||||||||||| ||||||||||||||||||||||||    
T  2826994 atctcactaaaacataaagctctccctctctctacaatt 2826956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 13362808 - 13362936
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  13362808 gtgcataaacacttcacaaccatcagatctagtgtatacgtgtaataatcataggcttctcaaactacaccaaatcaaaattcatttgcttcaaacattt 13362907  T
Q  278 ctctcactaaaacaaaaagctctccctct 306  Q
    |||||||||||||| |||||| |||||||    
T  13362908 ctctcactaaaacataaagctttccctct 13362936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 23335734 - 23335601
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  23335734 gtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaagttcatttgcatcaaacattt 23335635  T
Q  278 ctctcact-aaaacaaaaagctctccctctctct 310  Q
    |||||||| |||||| ||||||||||||||||||    
T  23335634 ctctcactaaaaacataaagctctccctctctct 23335601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 178 - 301
Target Start/End: Complemental strand, 28070180 - 28070057
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  28070180 gtgcataaacacttcacaactatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 28070081  T
Q  278 ctctcactaaaacaaaaagctctc 301  Q
    |||||||||||||| |||||||||    
T  28070080 ctctcactaaaacataaagctctc 28070057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 16668820 - 16668743
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaa 256  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||||||||    
T  16668820 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaa 16668743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 316
Target Start/End: Complemental strand, 25017244 - 25017121
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||  || | |||               ||||||||||||||||||||||||||    
T  25017244 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattttaggtttc---------------tcaaacttcatttgcttcaaacattt 25017160  T
Q  278 ctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25017159 ctctcactaaaacataaagctctccctctctctacaatt 25017121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 42512273 - 42512344
Alignment:
Q  239 aaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaacaaaaagctctccctctctct 310  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||    
T  42512273 aaactacaccaaatcaaacttcatttacttcaaacatttctctcactaaaacctaaagctctccctctctct 42512344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 18465582 - 18465506
Alignment:
Q  179 tgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||| ||  |||||||||||||||||||||||    
T  18465582 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcttagacttctcaaactacaccaaatcaa 18465506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 34329165 - 34329223
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttc 236  Q
    |||||||||||||||||||||||||||||  |||||||||  ||||||||||| |||||    
T  34329165 gtgcataaacacttcacaaccatcagatctagtgtacacgaataataatcataggcttc 34329223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 8948930 - 8949003
Alignment:
Q  180 gcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaa 255  Q
    |||||||||||||| ||| |||||||   |||||||||||  |||||| || ||||||||||||||||||||||||    
T  8948930 gcataaacacttcaaaactatcagatttagtgtacacgtg--ataatcctaggcttctcaaactacaccaaatcaa 8949003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 34329247 - 34329293
Alignment:
Q  268 tcaaacatttctctcactaaaacaaaaagctctccctctctctacaatt 316  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  34329247 tcaaacatttctctcactaaaacataaagctct--ctctctctacaatt 34329293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 42512237 - 42512265
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatc 206  Q
    |||||||||||||||||||||||||||||    
T  42512237 gtgcataaacacttcacaaccatcagatc 42512265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 27645 - 27785
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    |||||||||||||||||||| || |||||  ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||    
T  27645 gtgcataaacacttcacaactataagatctagtgtacacgtgtaataattctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 27744  T
Q  278 ctctcactaaaacaaaaagctctccctc--tctctacaatt 316  Q
    |||||||||||||| ||| |||||||||  |||||||||||    
T  27745 ctctcactaaaacataaatctctccctctttctctacaatt 27785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 178 - 289
Target Start/End: Complemental strand, 25259 - 25148
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 277  Q
    ||||||||||||||||||||||||||||   |||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||    
T  25259 gtgcataaacacttcacaaccatcagatttagtgtacacgtgtcataatcttaggtttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 25160  T
Q  278 ctctcactaaaa 289  Q
    ||||||||||||    
T  25159 ctctcactaaaa 25148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 7055 - 7104
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatc 227  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  7055 gtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatc 7104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 10702 - 10653
Alignment:
Q  178 gtgcataaacacttcacaaccatcagatcaggtgtacacgtgtaataatc 227  Q
    |||||||||||||||||||||||||||||  |||| ||  ||||||||||    
T  10702 gtgcataaacacttcacaaccatcagatctagtgtgcatatgtaataatc 10653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University