View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8529_low_6 (Length: 296)
Name: NF8529_low_6
Description: NF8529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8529_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 23508865 - 23508578
Alignment:
| Q |
18 |
gagagagcctatgggaccttcaatgtgaataagtccatttaagtgaaaaagaaagtccttcaatgtcatgaaagtgctatttatgaattcgtcggcaact |
117 |
Q |
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| T |
23508865 |
gagagagcctatgggaccttcaatgtgaataagtccatttaagtgaaaaagaaagtccttcaatgtcatgaaagtgctatttatgaattcgtcggcaact |
23508766 |
T |
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| Q |
118 |
gtaattgtacaacttataactgatattgacaaacaatcatcaaagcaattatct--------gttaattttgttactaacaactctttaggcaaaactat |
209 |
Q |
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| T |
23508765 |
gtaattgtacaacttataactgatattgacaaactattatcaaaacaattatttgttaattagttaattttgttactaacaactctttaggcaaaattat |
23508666 |
T |
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| Q |
210 |
atatcatca-----------tcatcttacttaaaagaattttccacttcaaatatgnnnnnnnagtaatctaactcttcgttagaaaa |
286 |
Q |
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| T |
23508665 |
atatcatcaaatcgttatcgtcaaattacttaaaagaattttccacttcaaatatgtttttttagtaatctaactcttcgttggaaaa |
23508578 |
T |
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