View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8529_low_9 (Length: 215)
Name: NF8529_low_9
Description: NF8529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8529_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 23177807 - 23177985
Alignment:
| Q |
18 |
ggtggtgatgaatttttgaaaagcattggtattaattttgctgatgtgattcggagtggtgatgcaatggcaatgtcaaaattatccctcaaattccttg |
117 |
Q |
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| T |
23177807 |
ggtggtgatgaattttttaaaagcattggtattaattttgctgatgtgattcggagtggtgatgcaatggcactgtcaaatttatccctcaaattccttg |
23177906 |
T |
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| Q |
118 |
caccattaagagtaagtcacaccaaatttgtttgttannnnnnngttaggtataatattttgatacaaatagataccat |
196 |
Q |
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| T |
23177907 |
caccattaagagtaagtcacaccaaatttgtttattatttttttgttaggtataatattttgatacaaatagataccat |
23177985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 23223146 - 23223257
Alignment:
| Q |
25 |
atgaatttttgaaaagcattggtattaattttgctgatgtgattcggagtggtgatgcaatggcaatgtcaaaattatccctcaaattccttgcaccatt |
124 |
Q |
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| T |
23223146 |
atgaatttttggaaagcataggcattaattgtgatgccgtggctcgctgtggtgatgcattggcattgtctgaactatccttcaaattccttgcacctct |
23223245 |
T |
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| Q |
125 |
aagagtaagtca |
136 |
Q |
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| T |
23223246 |
aagagtaagtca |
23223257 |
T |
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