View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8530_high_3 (Length: 399)

Name: NF8530_high_3
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8530_high_3
NF8530_high_3
[»] chr5 (11 HSPs)
chr5 (14-381)||(117301-117668)
chr5 (130-239)||(35138944-35139053)
chr5 (95-149)||(35757057-35757111)
chr5 (130-205)||(29922989-29923064)
chr5 (96-160)||(35999718-35999782)
chr5 (130-204)||(14299416-14299490)
chr5 (103-226)||(27374187-27374311)
chr5 (167-238)||(37877114-37877185)
chr5 (170-215)||(4306591-4306636)
chr5 (167-236)||(10898779-10898847)
chr5 (254-302)||(36639914-36639962)
[»] chr7 (18 HSPs)
chr7 (103-226)||(40491646-40491771)
chr7 (152-222)||(45557437-45557507)
chr7 (133-215)||(42481814-42481896)
chr7 (170-239)||(40561719-40561788)
chr7 (152-239)||(27571917-27572004)
chr7 (142-214)||(1442651-1442723)
chr7 (168-239)||(45005075-45005146)
chr7 (152-222)||(12306795-12306865)
chr7 (262-320)||(45004979-45005037)
chr7 (95-187)||(597826-597921)
chr7 (167-220)||(26975314-26975367)
chr7 (152-216)||(33853427-33853491)
chr7 (254-329)||(5489906-5489981)
chr7 (152-239)||(38123609-38123696)
chr7 (152-239)||(44365545-44365631)
chr7 (156-222)||(25156272-25156338)
chr7 (108-190)||(48158898-48158983)
chr7 (152-205)||(29829312-29829365)
[»] chr6 (24 HSPs)
chr6 (104-221)||(1499973-1500092)
chr6 (155-235)||(34620945-34621025)
chr6 (155-235)||(34748382-34748462)
chr6 (170-237)||(882743-882810)
chr6 (137-239)||(31305775-31305877)
chr6 (122-198)||(7953079-7953155)
chr6 (135-228)||(2234582-2234673)
chr6 (128-238)||(2493930-2494040)
chr6 (115-239)||(25388132-25388259)
chr6 (103-160)||(1349437-1349494)
chr6 (170-235)||(32888918-32888983)
chr6 (152-205)||(35098401-35098454)
chr6 (130-222)||(3524997-3525089)
chr6 (130-222)||(46209-46301)
chr6 (152-220)||(3798974-3799042)
chr6 (152-239)||(1485089-1485176)
chr6 (167-218)||(25208702-25208753)
chr6 (173-222)||(8856379-8856428)
chr6 (208-236)||(852590-852618)
chr6 (181-225)||(957595-957639)
chr6 (146-222)||(3289817-3289892)
chr6 (262-302)||(5724698-5724738)
chr6 (158-230)||(25195126-25195197)
chr6 (152-236)||(26280663-26280746)
[»] chr1 (18 HSPs)
chr1 (96-236)||(7524171-7524313)
chr1 (170-230)||(48548975-48549035)
chr1 (130-236)||(11817238-11817344)
chr1 (130-222)||(35961440-35961532)
chr1 (160-222)||(34915138-34915200)
chr1 (130-205)||(3515896-3515971)
chr1 (116-186)||(47899361-47899433)
chr1 (146-222)||(5268291-5268367)
chr1 (152-240)||(6932127-6932215)
chr1 (192-239)||(52263630-52263677)
chr1 (174-228)||(213246-213300)
chr1 (152-238)||(34571126-34571212)
chr1 (186-230)||(6041538-6041580)
chr1 (167-216)||(27849218-27849267)
chr1 (117-203)||(29759710-29759797)
chr1 (103-144)||(51500081-51500122)
chr1 (132-176)||(49824957-49825001)
chr1 (152-204)||(50751244-50751296)
[»] chr8 (20 HSPs)
chr8 (130-236)||(32927950-32928056)
chr8 (104-222)||(18123298-18123418)
chr8 (135-236)||(26100072-26100173)
chr8 (152-236)||(16972007-16972091)
chr8 (130-215)||(10368044-10368129)
chr8 (154-238)||(2778569-2778653)
chr8 (134-222)||(18356015-18356102)
chr8 (124-235)||(30098967-30099078)
chr8 (108-222)||(18355746-18355863)
chr8 (130-217)||(32994161-32994250)
chr8 (130-175)||(4662828-4662873)
chr8 (130-183)||(13418745-13418798)
chr8 (152-237)||(36447691-36447776)
chr8 (136-236)||(35495048-35495148)
chr8 (192-239)||(2924832-2924879)
chr8 (103-223)||(38335754-38335875)
chr8 (95-142)||(25693711-25693760)
chr8 (170-235)||(4950542-4950607)
chr8 (136-204)||(1373081-1373149)
chr8 (130-222)||(9461460-9461551)
[»] chr2 (17 HSPs)
chr2 (152-239)||(1976807-1976894)
chr2 (139-230)||(15220791-15220882)
chr2 (93-222)||(680173-680303)
chr2 (96-213)||(11759744-11759863)
chr2 (103-201)||(11650663-11650763)
chr2 (167-236)||(16518836-16518905)
chr2 (142-239)||(44439309-44439406)
chr2 (130-198)||(42774778-42774846)
chr2 (119-235)||(36307024-36307142)
chr2 (96-217)||(7649298-7649420)
chr2 (152-215)||(3853932-3853995)
chr2 (131-186)||(7654045-7654100)
chr2 (262-320)||(680345-680403)
chr2 (133-215)||(10618874-10618956)
chr2 (152-202)||(30503299-30503349)
chr2 (137-222)||(5971490-5971575)
chr2 (170-230)||(40401604-40401664)
[»] scaffold0361 (1 HSPs)
scaffold0361 (139-239)||(14044-14144)
[»] chr3 (24 HSPs)
chr3 (133-229)||(37334958-37335054)
chr3 (130-229)||(584714-584813)
chr3 (152-239)||(46853477-46853564)
chr3 (129-219)||(1441327-1441417)
chr3 (130-235)||(35264332-35264437)
chr3 (154-222)||(7262886-7262954)
chr3 (93-222)||(31013090-31013221)
chr3 (103-184)||(44958534-44958617)
chr3 (152-239)||(3776577-3776664)
chr3 (137-239)||(52925551-52925652)
chr3 (103-197)||(24916581-24916677)
chr3 (130-218)||(32112070-32112158)
chr3 (167-239)||(51285625-51285697)
chr3 (103-218)||(25129431-25129548)
chr3 (129-203)||(25181245-25181319)
chr3 (136-222)||(31708166-31708252)
chr3 (130-204)||(31766168-31766242)
chr3 (130-230)||(30958100-30958201)
chr3 (130-230)||(30973912-30974013)
chr3 (254-302)||(7717381-7717429)
chr3 (135-203)||(23263968-23264036)
chr3 (100-201)||(32523223-32523326)
chr3 (135-215)||(41115288-41115368)
chr3 (137-205)||(48089618-48089686)
[»] chr4 (18 HSPs)
chr4 (116-239)||(22250281-22250406)
chr4 (103-186)||(24364084-24364169)
chr4 (128-238)||(27096517-27096627)
chr4 (167-235)||(22683923-22683991)
chr4 (152-239)||(33843766-33843853)
chr4 (137-222)||(2206598-2206683)
chr4 (137-230)||(17898057-17898149)
chr4 (195-239)||(10185249-10185293)
chr4 (130-214)||(20911820-20911904)
chr4 (104-225)||(43868205-43868328)
chr4 (112-215)||(55244671-55244775)
chr4 (141-239)||(4243442-4243541)
chr4 (130-176)||(34155811-34155857)
chr4 (130-204)||(38740295-38740369)
chr4 (186-239)||(55927747-55927800)
chr4 (126-218)||(29778971-29779063)
chr4 (152-204)||(38716678-38716730)
chr4 (167-219)||(54487250-54487302)


Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 117301 - 117668
Alignment:
Q  14 tggacatcagagaacctaatggtaaacacatttgaataaacataattcccacacatatacgaaaaccaattacgactgattaagtgtacgtttggttctg 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  117301 tggacttcagagaacctaatggtaaacacatttgaataaacataattcccacacatatacgaaaaccaattacgactgattaagtgtatgtttggttctg 117400  T
Q  114 tgttgacaaaaattgattgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  117401 tgttgacaaaaattgattgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaa 117500  T
Q  214 aagtgagttaaacaatacatttgagttgaatcaaaatattcaatttcaagcttgaagtagaataaattttggaggcaaaatcacttctattccagagcaa 313  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  117501 aagtgagttaaacaatacatttgagtagaatcaaaatattcaatttcaagcttgaagtagaataaattttggaggcaaaatcacttttattccagagcaa 117600  T
Q  314 ccaaacacgcaagaattgaaatcaaacatacactaaatgtttctttgttgtgctttaagggctgcaag 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  117601 ccaaacacgcaagaattgaaatcaaacatacactaaatgtttctttgttgtgctttaagggctgcaag 117668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 35138944 - 35139053
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaat 229  Q
    |||||||||||||||||||||  ||||||||| ||| || ||||||||||||||||||||| |||||  |||||||  || | |||||||||| ||||||    
T  35138944 ttgagtgaattgattatgtaaacttgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaat 35139043  T
Q  230 acatttgagt 239  Q
    | ||||||||    
T  35139044 aaatttgagt 35139053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 35757057 - 35757111
Alignment:
Q  95 aagtgtacgtttggttctgtgttgacaaaaattgattgagtgaattgattatgta 149  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||    
T  35757057 aagtgtatgtttggttctatattgacaaaaattgattgagtgaattgattatgta 35757111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 29923064 - 29922989
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacat 205  Q
    |||| |||||||||||||||| ||||||| |||||| |||||||||||| || || | ||| ||||||||||||||    
T  29923064 ttgaatgaattgattatgtaaaattgattttgactataagtgagttgaatgtgaagtaatttatgtttggatacat 29922989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 35999718 - 35999782
Alignment:
Q  96 agtgtacgtttggttctgtgttgacaaaaattgattgagtgaattgattatgtaatattgattct 160  Q
    |||||| |||||||||||   |||||||||||||||| || |||||||||||||| |||||||||    
T  35999718 agtgtatgtttggttctgcaatgacaaaaattgattgtgtaaattgattatgtaaaattgattct 35999782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 14299490 - 14299416
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggataca 204  Q
    ||||||||||||||| ||||| |||||||||   || |||||||||||||||||| |||||  |||||| |||||    
T  14299490 ttgagtgaattgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgtttgaataca 14299416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 27374187 - 27374311
Alignment:
Q  103 gtttggttctgtgttgacaaaaattgatt-gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggat 201  Q
    |||||| | |||| || |||||||||||| || |||||||||| ||||| |||||||| ||||| |||| |||| || ||||| |||||  || ||| ||    
T  27374187 gtttggctatgtggtggcaaaaattgatttgaatgaattgattctgtaaaattgattccgactaaaagtaagttaaaagtaaagtgatttgtgattgaat 27374286  T
Q  202 acatctatgtaaaagtgagttaaac 226  Q
    || |  ||||||| |||||||||||    
T  27374287 actttcatgtaaatgtgagttaaac 27374311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 37877185 - 37877114
Alignment:
Q  167 aagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgag 238  Q
    |||| ||||||||||| | || || |||||||||| |||  || |||||||||||||||||||| |||||||    
T  37877185 aagtcagttgaaggtagagtggtttatgtttggattcattcatataaaagtgagttaaacaataaatttgag 37877114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 4306636 - 4306591
Alignment:
Q  170 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaa 215  Q
    ||||||||| ||||||||||| ||||||||||||||  ||||||||    
T  4306636 tgagttgaatgtaaaatgatttatgtttggatacattcatgtaaaa 4306591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 10898847 - 10898779
Alignment:
Q  167 aagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttg 236  Q
    |||||||||||||| ||| || || |||||||||||  || ||||||||||||||| ||||||| |||||    
T  10898847 aagtgagttgaaggcaaattgctttatgtttggatagttc-atgtaaaagtgagttgaacaataaatttg 10898779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 36639962 - 36639914
Alignment:
Q  254 caatttcaagcttgaagtagaataaattttggaggcaaaatcacttcta 302  Q
    ||||||| ||||| |||||||||  |||||||||||||||||| |||||    
T  36639962 caatttccagcttcaagtagaatctattttggaggcaaaatcaattcta 36639914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 40491771 - 40491646
Alignment:
Q  103 gtttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttgga 200  Q
    ||||||||||| | |||||| ||||||||  ||||||||||||| ||||| ||||||| |||||| |||||||||||||||||| ||||| || ||||||    
T  40491771 gtttggttctgcggtgacaagaattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttgga 40491672  T
Q  201 tacatctatgtaaaagtgagttaaac 226  Q
    |||||  |||||||||||||||||||    
T  40491671 tacattcatgtaaaagtgagttaaac 40491646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 45557507 - 45557437
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    |||||||||||||| |||||||||||||||||| |||||  |||||||||||||  |||||||||||||||    
T  45557507 attgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagtt 45557437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 42481814 - 42481896
Alignment:
Q  133 agtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaa 215  Q
    |||||||||||||||||| |||||||||||  | |||||||||||| ||||||||||| ||||| |||| ||| ||| |||||    
T  42481814 agtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgttcggatgcatttatctaaaa 42481896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 40561719 - 40561788
Alignment:
Q  170 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    ||||||||| ||||| ||||| ||||||||||||||  ||||||||||||||| ||||||| ||||||||    
T  40561719 tgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagt 40561788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 27572004 - 27571917
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    ||||||| || ||| ||||||||| |||||||||||||| ||| |||||||||| |||||||| ||||||| || |||| | ||||||    
T  27572004 attgattatggctaaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaataataaacttgagt 27571917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 1442723 - 1442651
Alignment:
Q  142 attatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaa 214  Q
    ||||||||| |||||||||||||| |||||||||| ||||||| || || |||| |||||||||  |||||||    
T  1442723 attatgtaaaattgattctgactaaaagtgagttgcaggtaaagtggtttatgtatggatacattcatgtaaa 1442651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 45005146 - 45005075
Alignment:
Q  168 agtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||||||||||  |||| |||||| |||| || |||||||||||||||| || |||| ||||||||    
T  45005146 agtgagttgaaggtaaaccgattgatgttttgatatatttatgtaaaagtgagttgaataataaatttgagt 45005075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 12306865 - 12306795
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    |||||||||| ||| ||||||||||||| |||| ||||| |||||||| || ||  |||||||||||||||    
T  12306865 attgattctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagtt 12306795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 45005037 - 45004979
Alignment:
Q  262 agcttgaagtagaataaattttggaggcaaaatcacttctattccagagcaaccaaaca 320  Q
    ||||| ||||||||| |||| || ||||||||||| |||||||| ||||||||||||||    
T  45005037 agcttcaagtagaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaaca 45004979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 597826 - 597921
Alignment:
Q  95 aagtgtacgtttggttctgtgttgacaaaaattgattg---agtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatg 187  Q
    ||||||| ||||||||||| | ||| |||| ||||||    |||||||||| ||||||| ||||||| || ||| || ||||||||||||||||||    
T  597826 aagtgtatgtttggttctgcggtgataaaatttgattttttagtgaattgagtatgtaaaattgattttggctaaaactgagttgaaggtaaaatg 597921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 26975314 - 26975367
Alignment:
Q  167 aagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgag 220  Q
    |||||||||||| ||||||||||| ||||||| |||| | ||||||||||||||    
T  26975314 aagtgagttgaatgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 26975367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 33853427 - 33853491
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaag 216  Q
    |||||||||| |||  |||||||||||| |||| ||||| ||||||||||||||  |||||||||    
T  33853427 attgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaaag 33853491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 5489906 - 5489981
Alignment:
Q  254 caatttcaagcttgaagtagaataaattttggaggcaaaatcacttctattccagagcaaccaaacacgcaagaat 329  Q
    ||||||| ||| | ||||||||| ||||||||||||||||| | ||||| ||  ||||||||||||| | ||||||    
T  5489906 caatttctagcatcaagtagaatcaattttggaggcaaaattaattctactcaggagcaaccaaacatgtaagaat 5489981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 38123609 - 38123696
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    ||||||| |||||| || ||||||||||||||| | |||  |||| ||| ||||  ||||||||||||||| | ||||| ||||||||    
T  38123609 attgattatgactaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagt 38123696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 44365545 - 44365631
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    ||||||||  |||| |||| | ||||||||||| ||||| ||| | ||||||||  ||||||||||||| | ||||||||||||||||    
T  44365545 attgattccaactaaaagtaaattgaaggtaaagtgatttatgataggatacattaatgtaaaagtgag-tgaacaatacatttgagt 44365631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 25156338 - 25156272
Alignment:
Q  156 attctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    |||||||||| || |||||||||| ||||||||||  |||||| ||||||  || ||||||||||||    
T  25156338 attctgactaaaaatgagttgaagataaaatgatttgtgtttgaatacattcatataaaagtgagtt 25156272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 48158898 - 48158983
Alignment:
Q  108 gttctgtgttgacaaaaattgattg--agtgaattgattatgtaatattgattctgactagaa-gtgagttgaaggtaaaatgatt 190  Q
    |||||| ||||||  ||||||||||  |||||||||||| ||||  ||||||||  |||| || ||||||||||||||||||||||    
T  48158898 gttctgcgttgacggaaattgattgtgagtgaattgattttgtataattgattcaaactaaaaagtgagttgaaggtaaaatgatt 48158983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 29829312 - 29829365
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacat 205  Q
    |||||||||| ||| || ||||||||| ||||| ||||| ||||||||||||||    
T  29829312 attgattctggctaaaaatgagttgaatgtaaagtgatttatgtttggatacat 29829365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 1500092 - 1499973
Alignment:
Q  104 tttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggat 201  Q
    |||||||||| |||||||||||||||||  || |||||||||| ||||| ||||||| || ||| ||| |||||||  ||||| ||||| ||||||| ||    
T  1500092 tttggttctgagttgacaaaaattgattttgactgaattgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtttgaat 1499993  T
Q  202 acatctatgtaaaagtgagt 221  Q
    |||| |||||||||||||||    
T  1499992 acatttatgtaaaagtgagt 1499973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 34621025 - 34620945
Alignment:
Q  155 gattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacattt 235  Q
    ||||||| |||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||| || |||| ||||    
T  34621025 gattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattt 34620945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 34748462 - 34748382
Alignment:
Q  155 gattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacattt 235  Q
    ||||||| |||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||| || |||| ||||    
T  34748462 gattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattt 34748382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 882810 - 882743
Alignment:
Q  170 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttga 237  Q
    ||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  882810 tgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 31305775 - 31305877
Alignment:
Q  137 aattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttg 236  Q
    |||||||| ||||| |||||||| ||||| ||| | |||||||||||||| ||| ||||||||||| ||  ||||||||||||||| | ||||| |||||    
T  31305775 aattgattttgtaaaattgattccgactaaaagggtgttgaaggtaaaatcatttatgtttggatatattaatgtaaaagtgagttgatcaataaatttg 31305874  T
Q  237 agt 239  Q
    |||    
T  31305875 agt 31305877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 7953155 - 7953079
Alignment:
Q  122 aaaattgattgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttg 198  Q
    |||||||||||||||||||||||||| || |||||||||| | | || ||||||||||||||| ||||| |||||||    
T  7953155 aaaattgattgagtgaattgattatgaaaaattgattctggccaaaattgagttgaaggtaaagtgatttatgtttg 7953079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 2234673 - 2234582
Alignment:
Q  135 tgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaa 228  Q
    ||||||||||||| || |||||| ||| ||| ||||||| ||||||||||||||||  || |||||||||| ||||||| |||||||| |||||    
T  2234673 tgaattgattatgcaaaattgatgctggctaaaagtgagatgaaggtaaaatgatt--tgcttggatacatttatgtaatagtgagttgaacaa 2234582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 2493930 - 2494040
Alignment:
Q  128 gattgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaaca 227  Q
    ||||||||| || |||| ||||| ||||||| || ||||||| | |||||| ||||  ||||| ||||||| ||| || |||||||||||| ||| ||||    
T  2493930 gattgagtggatggattgtgtaaaattgattatggctagaagcgcgttgaatgtaaggtgatttatgtttgaatatatttatgtaaaagtgtgttgaaca 2494029  T
Q  228 atacatttgag 238  Q
    ||| |||||||    
T  2494030 ataaatttgag 2494040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 25388259 - 25388132
Alignment:
Q  115 gttgacaaaaattgat--tgagtgaattgat--tatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatg 210  Q
    ||||||||||||||||  |||||||||| ||  ||||| | |||||||||||||  || ||||||| |||||| |||||| |  |||||||| || ||||    
T  25388259 gttgacaaaaattgatattgagtgaattaatcgtatgttaaattgattctgacttaaaatgagttggaggtaatatgatttacatttggatatatttatg 25388160  T
Q  211 taaaagtgagttaaacaatacatttgagt 239  Q
    ||||||||||||  |||||| ||||||||    
T  25388159 taaaagtgagtt-gacaataaatttgagt 25388132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 1349494 - 1349437
Alignment:
Q  103 gtttggttctgtgttgacaaaaattgattgagtgaattgattatgtaatattgattct 160  Q
    |||||||| |||  |||||||||||||||||||||||||||| ||||| |||||||||    
T  1349494 gtttggttgtgtagtgacaaaaattgattgagtgaattgattttgtaaaattgattct 1349437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 32888918 - 32888983
Alignment:
Q  170 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacattt 235  Q
    |||||||||| |||||||||| ||||||| ||| || |||||||||||||||| ||||||| ||||    
T  32888918 tgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaacaataaattt 32888983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 35098401 - 35098454
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacat 205  Q
    ||||||| |||||| |||||||||||||||||| | ||||||||||||||||||    
T  35098401 attgattttgactaaaagtgagttgaaggtaaagtaattcatgtttggatacat 35098454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 3525089 - 3524997
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    |||| |||||||||||||||| ||||||| || ||| |||||||||||| | ||| || || || |||| |||||| ||||||||||| ||||    
T  3525089 ttgaatgaattgattatgtaaaattgattgtggctaaaagtgagttgaatgcaaactggtttatatttgaatacatttatgtaaaagtcagtt 3524997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 46209 - 46301
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||| |  |||| | |||  |||||||||||||   || |||||||||||    
T  46209 ttgagtgaattgattctgtaaaattgattctaactaaaagtgagttgcaattaaagttatttgtgtttggatacattcgtggaaaagtgagtt 46301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 3799042 - 3798974
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgag 220  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||||  ||||||  |||||||| ||||    
T  3799042 attgattctgattaaaagtgagttgaagataaaatgatttatgtttttatacattcatgtaaaaatgag 3798974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 1485089 - 1485176
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||  ||| ||||||||| || ||  | ||||| | |||||||||||  |||||||||||||||| ||||||| ||||||||    
T  1485089 attgattctagctaaaagtgagtttaaagttgagtgatttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagt 1485176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 25208753 - 25208702
Alignment:
Q  167 aagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtg 218  Q
    |||||||||||| ||||||||||| |||||| |||| || ||||||||||||    
T  25208753 aagtgagttgaatgtaaaatgatttatgtttcgatagatttatgtaaaagtg 25208702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 8856428 - 8856379
Alignment:
Q  173 gttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    ||||||||||||||||||  |||||||||||||  |||| ||||||||||    
T  8856428 gttgaaggtaaaatgatttgtgtttggatacattcatgtgaaagtgagtt 8856379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 852618 - 852590
Alignment:
Q  208 atgtaaaagtgagttaaacaatacatttg 236  Q
    |||||||||||||||||||||||||||||    
T  852618 atgtaaaagtgagttaaacaatacatttg 852590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 957595 - 957639
Alignment:
Q  181 taaaatgattcatgtttggatacatctatgtaaaagtgagttaaa 225  Q
    |||||||||| ||||||||||||||  |||||||| |||||||||    
T  957595 taaaatgatttatgtttggatacattcatgtaaaaatgagttaaa 957639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 3289892 - 3289817
Alignment:
Q  146 tgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    ||||| |||||||  ||||  |||||||||| || |||| |||||  ||||||||||||| ||||||||||||||||    
T  3289892 tgtaaaattgatttcgacttaaagtgagttgcagataaagtgatttgtgtttggatacat-tatgtaaaagtgagtt 3289817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 5724698 - 5724738
Alignment:
Q  262 agcttgaagtagaataaattttggaggcaaaatcacttcta 302  Q
    ||||| ||||||||| ||||||||||||||||||| |||||    
T  5724698 agcttcaagtagaatcaattttggaggcaaaatcaattcta 5724738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 25195126 - 25195197
Alignment:
Q  158 tctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaata 230  Q
    |||| ||| |||||||||||||||||| || || ||| ||||||||||  ||||||| |||| ||||||||||    
T  25195126 tctgtctaaaagtgagttgaaggtaaagtgttttatg-ttggatacattcatgtaaatgtgatttaaacaata 25195197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 26280746 - 26280663
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttg 236  Q
    ||||||| ||| || ||||| |||||||||||||| ||| |||||| ||||  | |||||||||||||||| ||| ||| |||||    
T  26280746 attgattatgattaaaagtgggttgaaggtaaaataatttatgtttagatatgt-tatgtaaaagtgagtttaactataaatttg 26280663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 7524313 - 7524171
Alignment:
Q  96 agtgtacgtttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcat 193  Q
    |||||| ||||||||||||| |||||| ||||||||  | ||||| ||||| | ||| ||||||||| |||| ||||||| | |||||||| |||||  |    
T  7524313 agtgtatgtttggttctgtggtgacaataattgattttgggtgaactgattctataaaattgattctaactaaaagtgagctcaaggtaaagtgatttgt 7524214  T
Q  194 gtttggatacatctatgtaaaagtgagttaaacaatacatttg 236  Q
    ||||||| |||| |||||||||||||||| ||| ||| |||||    
T  7524213 gtttggacacatttatgtaaaagtgagttgaactataaatttg 7524171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 48548975 - 48549035
Alignment:
Q  170 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaata 230  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaacaata 48549035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 11817238 - 11817344
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaat 229  Q
    ||||||||||||||| ||||| ||||||||| |||| ||| ||||||||| ||||||||||  | |||| ||||||  |||||||||| |||| ||| ||    
T  11817238 ttgagtgaattgattttgtaaaattgattctaactaaaagcgagttgaagataaaatgatttttatttgaatacattaatgtaaaagttagttgaactat 11817337  T
Q  230 acatttg 236  Q
    | |||||    
T  11817338 aaatttg 11817344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 35961532 - 35961440
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    |||||| |||||||| ||||| || ||||  | ||| |||||||||||||||||||||||| ||||||  ||||||  |||||||||||||||    
T  35961532 ttgagtaaattgattctgtaaaatagattacggctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagtt 35961440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 34915200 - 34915138
Alignment:
Q  160 tgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    |||||| |||||||||| ||||||||||||| ||||||| ||||||  |||||||||||||||    
T  34915200 tgactaaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagtt 34915138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 3515971 - 3515896
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacat 205  Q
    ||||||||||||||||||||| ||||||||||   | || |||||||||||| || |||||  |||||||||||||    
T  3515971 ttgagtgaattgattatgtaaaattgattctggtgaaaattgagttgaaggtgaagtgatttgtgtttggatacat 3515896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 47899433 - 47899361
Alignment:
Q  116 ttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaat 186  Q
    ||||||| ||||||||  ||||||||||||| ||||| ||||||||| |||| |||||||||| || ||||||    
T  47899433 ttgacaagaattgattttgagtgaattgattttgtaaaattgattcttactaaaagtgagttgcagataaaat 47899361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 5268367 - 5268291
Alignment:
Q  146 tgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    ||||| |||||||||| ||| |||||||||||| ||||| |||||  |||||| ||| ||  |||||||||||||||    
T  5268367 tgtaaaattgattctgcctaaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagtt 5268291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 6932127 - 6932215
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagtt 240  Q
    |||||||||||||| |||||||||||| ||||||||||    |||||||| |||   |||||| ||||||| ||||||| |||| ||||    
T  6932127 attgattctgactaaaagtgagttgaatgtaaaatgatcttcgtttggattcattcgtgtaaaggtgagttgaacaatagattttagtt 6932215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 52263630 - 52263677
Alignment:
Q  192 atgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    ||||||||||||||  |||||||| |||||||||||||| ||||||||    
T  52263630 atgtttggatacattaatgtaaaactgagttaaacaataaatttgagt 52263677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 213246 - 213300
Alignment:
Q  174 ttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaa 228  Q
    ||||| ||||| ||||| ||||||||||||||  ||||||||||||||| |||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaacaa 213300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 34571126 - 34571212
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgag 238  Q
    ||||||||||| || |||||||||||| ||||  | ||| || ||||||||| | || |||||||||| || ||||||| |||||||    
T  34571126 attgattctgattaaaagtgagttgaatgtaagttcatttatatttggatacgtttaggtaaaagtgaattgaacaataaatttgag 34571212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 6041580 - 6041538
Alignment:
Q  186 tgattcatgtttggatacatctatgtaaaagtgagttaaacaata 230  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||    
T  6041580 tgatttatgtttggatacat--atgtaaaagtgagttaaacaata 6041538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 27849267 - 27849218
Alignment:
Q  167 aagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaag 216  Q
    ||||||||||||||||||||||||  |||| ||||||||  |||||||||    
T  27849267 aagtgagttgaaggtaaaatgatttgtgttaggatacattcatgtaaaag 27849218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 29759797 - 29759710
Alignment:
Q  117 tgacaaaaattgattg--agtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatac 203  Q
    |||||||||||||||   |||| | |||||| |||| ||||||| ||  || |||||||||||| ||||||||||| ||||||||||||    
T  29759797 tgacaaaaattgatttcaagtgcactgatta-gtaaaattgattatggttaaaagtgagttgaatgtaaaatgatttatgtttggatac 29759710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 51500081 - 51500122
Alignment:
Q  103 gtttggttctgtgttgacaaaaattgattgagtgaattgatt 144  Q
    ||||||||||| |||||||| |||| ||||||||||||||||    
T  51500081 gtttggttctgcgttgacaagaattaattgagtgaattgatt 51500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 49825001 - 49824957
Alignment:
Q  132 gagtgaattgattatgtaatattgattctgactagaagtgagttg 176  Q
    ||||||| ||||| |||| ||||||||||||||| ||||||||||    
T  49825001 gagtgaaatgattttgtagtattgattctgactaaaagtgagttg 49824957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 50751244 - 50751296
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggataca 204  Q
    |||||||| ||||| ||||||||| || ||||||||||| ||||||| |||||    
T  50751244 attgattcggactaaaagtgagttaaatgtaaaatgatttatgtttgaataca 50751296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 32928056 - 32927950
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaat 229  Q
    ||||| ||||||||||||||| ||||||||| |||| || ||||||||||| ||| |||||  |||||||||||||  ||||||||||||||| ||| ||    
T  32928056 ttgagggaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactat 32927957  T
Q  230 acatttg 236  Q
    | |||||    
T  32927956 aaatttg 32927950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 18123418 - 18123298
Alignment:
Q  104 tttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggat 201  Q
    ||||||||| |||||| || ||||||||  |||||||||||| |||||| || || ||| |||| |||||| |||||||||||||||||  |||| | ||    
T  18123418 tttggttctttgttgataagaattgatttagagtgaattgatgatgtaaaatcgactctaactaaaagtgaattgaaggtaaaatgatttgtgttggaat 18123319  T
Q  202 acatctatgtaaaagtgagtt 222  Q
    | || ||||||||||||||||    
T  18123318 atatttatgtaaaagtgagtt 18123298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 26100072 - 26100173
Alignment:
Q  135 tgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatt 234  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||   |||  ||||||||| ||| |||||||||||||||| ||| ||| |||    
T  26100072 tgaattgattatgtaaaattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatt 26100171  T
Q  235 tg 236  Q
    ||    
T  26100172 tg 26100173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 16972007 - 16972091
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttg 236  Q
    |||||||| ||||| ||||||||||||||||||||||||  |||||| ||||||  |||||||||||| || ||||||| |||||    
T  16972007 attgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttg 16972091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 10368129 - 10368044
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaa 215  Q
    |||||||||||| || ||||| ||||||| ||| || |||||||||||||||||| |||||  ||||| |||||||  ||||||||    
T  10368129 ttgagtgaattgtttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgatttgtgtttagatacattcatgtaaaa 10368044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 2778653 - 2778569
Alignment:
Q  154 tgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgag 238  Q
    |||||||  ||| ||||||||||||| |||| ||||| || |||||||| || |||| ||||||||||| ||||||| |||||||    
T  2778653 tgattctagctaaaagtgagttgaagataaagtgatttatttttggataaatttatgcaaaagtgagttgaacaatagatttgag 2778569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 18356015 - 18356102
Alignment:
Q  134 gtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    ||||||||||||||||| ||||||||| |||| |||||||||||||||||   | || ||||| |||||||| ||| |||| |||||||    
T  18356015 gtgaattgattatgtaa-attgattctaactaaaagtgagttgaaggtaagggggtttatgttcggatacatttatctaaacgtgagtt 18356102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 30099078 - 30098967
Alignment:
Q  124 aattgattgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtta 223  Q
    ||||||||||||| ||  ||| | ||| |||||||||||| | |||||| | ||| ||||| ||||| ||| | ||||| || |||||||||||||||||    
T  30099078 aattgattgagtgcataaattctataaaattgattctgaccaaaagtgaatagaatgtaaagtgatttatgatcggatatatttatgtaaaagtgagtta 30098979  T
Q  224 aacaatacattt 235  Q
    ||| ||| ||||    
T  30098978 aactataaattt 30098967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 18355746 - 18355863
Alignment:
Q  108 gttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaa-tgattcatgtttggataca 204  Q
    |||||||| ||| |||||||||||  ||||||||||||| ||||| ||||||| ||| || |||||  ||| || ||||| ||||| || ||||||||||    
T  18355746 gttctgtggtgataaaaattgattttgagtgaattgattttgtaaaattgattatgattaaaagtggcttggagataaaagtgatttatatttggataca 18355845  T
Q  205 tctatgtaaaagtgagtt 222  Q
    | | |||||||| |||||    
T  18355846 tttgtgtaaaagggagtt 18355863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 32994161 - 32994250
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaa--tgattcatgtttggatacatctatgtaaaagt 217  Q
    |||| |||| ||||||||||| |||||||||| ||  |||||||||||||||||||  ||||| |||||||||  |||  ||||||||||    
T  32994161 ttgaatgaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaaatttgatttatgtttggactcattcatgtaaaagt 32994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 4662828 - 4662873
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagtt 175  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||    
T  4662828 ttgagtgaattgattatgtaaaattgattctgactaaaactgagtt 4662873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 13418745 - 13418798
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaa 183  Q
    |||||||||||||||| |||  |||||||||||||| |||||||||||| ||||    
T  13418745 ttgagtgaattgattaggtagaattgattctgactaaaagtgagttgaatgtaa 13418798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 36447691 - 36447776
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttga 237  Q
    |||||||| ||||| ||||||||||||  ||||||||||  ||||| ||||||| |||||| || |||||| || |||| ||||||    
T  36447691 attgattccgactaaaagtgagttgaatataaaatgatttgtgtttagatacatttatgtataactgagttgaataataaatttga 36447776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 35495148 - 35495048
Alignment:
Q  136 gaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacattt 235  Q
    ||||||||||||||| |||| |||||| || ||||| ||||||  |||| |||||  |||||||||| ||  |||||||||| |||| ||| ||| ||||    
T  35495148 gaattgattatgtaaaattgcttctgattaaaagtgggttgaatataaagtgatttgtgtttggatatattcatgtaaaagtaagttgaactatagattt 35495049  T
Q  236 g 236  Q
    |    
T  35495048 g 35495048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 2924879 - 2924832
Alignment:
Q  192 atgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||||||| |||||||||||||||| | ||||| ||||||||    
T  2924879 atgtttggatacatatatgtaaaagtgagttgatcaatatatttgagt 2924832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 38335754 - 38335875
Alignment:
Q  103 gtttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttgga 200  Q
    ||||||||||  | |||||| ||||||||  |||| ||||||  |||||| ||| ||| ||| || ||||||||||||||| || |||||  |||| |||    
T  38335754 gtttggttcttcggtgacaagaattgattttgagttaattgacaatgtaaaattaatt-tgattaaaagtgagttgaaggtgaattgatttgtgttcgga 38335852  T
Q  201 tacatctatgtaaaagtgagtta 223  Q
    |||||  ||||||||||||||||    
T  38335853 tacattcatgtaaaagtgagtta 38335875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 25693711 - 25693760
Alignment:
Q  95 aagtgtacgtttggttctgtgttgacaaaaattga--ttgagtgaattga 142  Q
    |||||||||||||||||| | ||||||||||||||  |||||||||||||    
T  25693711 aagtgtacgtttggttctattttgacaaaaattgattttgagtgaattga 25693760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 4950607 - 4950542
Alignment:
Q  170 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacattt 235  Q
    ||||||||||||||| ||||| ||||||||||| || ||||  |||||||||| || |||| ||||    
T  4950607 tgagttgaaggtaaagtgatttatgtttggatatatttatgagaaagtgagttgaaaaataaattt 4950542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 1373149 - 1373081
Alignment:
Q  136 gaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggataca 204  Q
    ||||||||| ||||| ||||||| ||  || ||||||||||||| | || ||||| |||||||||||||    
T  1373149 gaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttggataca 1373081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 9461460 - 9461551
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    |||||| |||||||||| ||| |||||||||||||| || ||| ||| |  |||| |||||  |||||||||||||  || ||||||||||||    
T  9461460 ttgagttaattgattatttaaaattgattctgacta-aaatgaattgcaactaaagtgatttgtgtttggatacattcatataaaagtgagtt 9461551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 1976807 - 1976894
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||| |||||| |||||||||||||||  || | ||||||||||||||  ||||||||||||||| ||||||| ||||||||    
T  1976807 attgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagt 1976894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 15220791 - 15220882
Alignment:
Q  139 ttgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaata 230  Q
    |||||| ||||||||||||| |||| | |||||||||||| ||||| ||||| ||||||||||||||  |||| |||||||||| |||||||    
T  15220791 ttgattttgtaatattgattatgacgaaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaata 15220882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 680173 - 680303
Alignment:
Q  93 ttaagtgtacgtttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgatt 190  Q
    ||||||||| |||||||| |||  ||| | |||||||||  |||||||||||||||||||  |||| |||| ||| || ||||||||||||||| || ||    
T  680173 ttaagtgtatgtttggttatgttgtgagagaaattgattttgagtgaattgattatgtaaagttgagtctgtcta-aattgagttgaaggtaaagtgttt 680271  T
Q  191 catgtttggatacatctatgtaaaagtgagtt 222  Q
      |||||| ||||||  |||||||||||||||    
T  680272 tgtgtttgcatacattcatgtaaaagtgagtt 680303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 11759744 - 11759863
Alignment:
Q  96 agtgtacgtttggttctgtgttgacaaaaattga--ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcat 193  Q
    |||||| |||||||| || | ||| |||||||||  ||||||||||||||| ||||| ||||||| ||| || |||||||||||||||||| || ||  |    
T  11759744 agtgtatgtttggttatgaggtgaaaaaaattgagtttgagtgaattgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgt 11759843  T
Q  194 gtttggatacatctatgtaa 213  Q
    ||||| |||||  |||||||    
T  11759844 gtttgtatacacttatgtaa 11759863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 11650663 - 11650763
Alignment:
Q  103 gtttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttgga 200  Q
    |||||||| || |||||||||||||||||  |||||||||||||||||||  |||||| |||||| || | | |||||  || ||||||| |||||||||    
T  11650663 gtttggttttgcgttgacaaaaattgattttgagtgaattgattatgtaaatttgattatgactaaaatttaattgaatatagaatgatttatgtttgga 11650762  T
Q  201 t 201  Q
    |    
T  11650763 t 11650763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 16518905 - 16518836
Alignment:
Q  167 aagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttg 236  Q
    ||||||||||| ||||||||||||  |||||||||||||  ||||||||||||||| ||| ||| |||||    
T  16518905 aagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttg 16518836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 44439406 - 44439309
Alignment:
Q  142 attatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||  |||||  || ||| ||||||||| || ||||| ||||| |||||||||||  | |||||||||||||||| ||||||| ||||||||    
T  44439406 attatgtaagtttgatcatggctataagtgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagt 44439309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 42774778 - 42774846
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttg 198  Q
    |||| |||||||||| ||||| |||||||||||||| || | |||||||||||||||| || |||||||    
T  42774778 ttgaatgaattgattttgtaaaattgattctgactaaaaataagttgaaggtaaaatggtttatgtttg 42774846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 36307142 - 36307024
Alignment:
Q  119 acaaaaattgat--tgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaag 216  Q
    ||||||||||||  |||||||||||||||||||| ||||||| ||  || |||||||||||| ||||| | ||| ||||||| ||  || ||| ||||||    
T  36307142 acaaaaattgatcttgagtgaattgattatgtaaaattgattatggataaaagtgagttgaacgtaaagtaattgatgtttgtatgtatttatataaaag 36307043  T
Q  217 tgagttaaacaatacattt 235  Q
    ||  || ||||||| ||||    
T  36307042 tggatttaacaataaattt 36307024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 7649420 - 7649298
Alignment:
Q  96 agtgtacgtttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcat 193  Q
    |||||| |||||||||||| ||||  ||||  ||||  ||| |||||||||| || ||||| ||| || ||| |||||||||| ||||||| ||||| ||    
T  7649420 agtgtatgtttggttctgtattgatgaaaacggattttgagcgaattgattaagttatattcattatg-ctaaaagtgagttggaggtaaagtgatttat 7649322  T
Q  194 gtttggatacatctatgtaaaagt 217  Q
     |||||||| || |||||||||||    
T  7649321 ttttggataaatttatgtaaaagt 7649298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 3853995 - 3853932
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaa 215  Q
    ||||||| ||| || |||||||||||| ||||| ||||| ||||||||||||||  ||||||||    
T  3853995 attgattttgattaaaagtgagttgaatgtaaattgatttatgtttggatacattcatgtaaaa 3853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 7654100 - 7654045
Alignment:
Q  131 tgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaat 186  Q
    |||||||||||||||||| ||||| ||| || ||| |||||||||| |||||||||    
T  7654100 tgagtgaattgattatgttatattcattatggctaaaagtgagttggaggtaaaat 7654045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 680345 - 680403
Alignment:
Q  262 agcttgaagtagaataaattttggaggcaaaatcacttctattccagagcaaccaaaca 320  Q
    ||||| ||||||||| |||| |||||||||||||| |||||||| | |||||| |||||    
T  680345 agcttcaagtagaatcaattctggaggcaaaatcagttctattcgaaagcaactaaaca 680403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 10618874 - 10618956
Alignment:
Q  133 agtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaa 215  Q
    |||||||||||| ||||| |||||||||  ||| || ||| ||||||||||| ||| | ||||||| |||||| ||| |||||    
T  10618874 agtgaattgattttgtaaaattgattctagctaaaaatgaattgaaggtaaagtgaattatgtttgtatacatttatataaaa 10618956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 30503349 - 30503299
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggata 202  Q
    |||||||||||||| |||| ||||||||||||| |||||  ||||||||||    
T  30503349 attgattctgactaaaagttagttgaaggtaaactgatttttgtttggata 30503299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 5971490 - 5971575
Alignment:
Q  137 aattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    |||||||| ||||| |||||||  || || || |||| |||| ||||||||  ||| |||||||||||| ||| ||||||||||||    
T  5971490 aattgattgtgtaaaattgattacgaataaaattgagatgaaagtaaaatgtatcacgtttggatacatttatataaaagtgagtt 5971575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 40401604 - 40401664
Alignment:
Q  170 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaata 230  Q
    ||||||||||||| | | ||| ||||||||||||||  |||||||||| |||| |||||||    
T  40401604 tgagttgaaggtagactaatttatgtttggatacattcatgtaaaagtcagttgaacaata 40401664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 14044 - 14144
Alignment:
Q  139 ttgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgag 238  Q
    |||||| ||||| |||||||||  ||| || ||||||||||||||| ||||| ||||||||||||||  |||| |||||||||| || |||| |||||||    
T  14044 ttgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgag 14143  T
Q  239 t 239  Q
    |    
T  14144 t 14144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 37334958 - 37335054
Alignment:
Q  133 agtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaat 229  Q
    |||||||||||||| ||| |||||||| ||||| || ||||||||||||||| ||||| |||| || ||||||  || ||||| |||||| ||||||    
T  37334958 agtgaattgattatataaaattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaat 37335054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 584714 - 584813
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaat 229  Q
    ||||||||||||||| ||||| ||||||| |  ||| || | |||||||| ||||  ||||  ||||||||||||| |||||||||||||| ||||||||    
T  584714 ttgagtgaattgattttgtaaaattgattttagctaaaattaagttgaagctaaatggatttctgtttggatacatttatgtaaaagtgagctaaacaat 584813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 46853477 - 46853564
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    ||||||| || ||| |||| ||||||||||||| ||||| ||||  ||||| || |||||||||||||||| ||||||| ||||||||    
T  46853477 attgattttggctacaagtaagttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagt 46853564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 1441327 - 1441417
Alignment:
Q  129 attgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtga 219  Q
    |||||||||||| ||| ||||| |||||||||| ||| |||||||||||| ||||| |||||  ||||| |||||||  | ||||||||||    
T  1441327 attgagtgaattaattttgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgatttgtgtttagatacattcacgtaaaagtga 1441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 35264332 - 35264437
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaat 229  Q
    ||||||||||||||| ||||| ||||||| | || | |||||||||||| ||||| ||| | |||||||| |||||  |||||||| ||| || ||||||    
T  35264332 ttgagtgaattgattctgtaaaattgattgtaaccaaaagtgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaat 35264431  T
Q  230 acattt 235  Q
    | ||||    
T  35264432 aaattt 35264437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 7262954 - 7262886
Alignment:
Q  154 tgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    ||||||||  ||||||||||||||||||| |||| || |||||| |||||||  |||||||||||||||    
T  7262954 tgattctggatagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagtt 7262886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 31013221 - 31013090
Alignment:
Q  93 ttaagtgtacgtttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgatt 190  Q
    |||||||||  ||||||||||  ||| ||| ||||||||  |||||||||||||   ||| |||||||| ||||| |||||||||| || |||| |||||    
T  31013221 ttaagtgtatatttggttctgctttggcaagaattgattttgagtgaattgattccataaaattgattccgactaaaagtgagttgtagataaagtgatt 31013122  T
Q  191 catgtttggatacatctatgtaaaagtgagtt 222  Q
      ||||||||| |||  ||||| |||||||||    
T  31013121 tgtgtttggatgcattcatgtacaagtgagtt 31013090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 44958534 - 44958617
Alignment:
Q  103 gtttggttctgtgttgacaaaaattga--ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaa 184  Q
    |||||||| || |||||||||||| ||  |||||||||||||| |||||| ||||||| || ||| |||||||||||| |||||    
T  44958534 gtttggttatgagttgacaaaaatcgactttgagtgaattgatcatgtaaaattgattttggctaaaagtgagttgaaagtaaa 44958617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 3776664 - 3776577
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||| ||| || ||||||||| ||||| ||||| ||| ||||||||||  ||||||||||||||| | ||| | ||||||||    
T  3776664 attgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagt 3776577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 52925551 - 52925652
Alignment:
Q  137 aattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttg 236  Q
    |||||||| ||||| ||||||||| |||| || ||||||||| ||||| || || ||||||||||||    ||||||||| ||| |||| ||||||||||    
T  52925551 aattgattttgtaaaattgattctcactaaaattgagttgaaagtaaagtggtttatgtttggataccgtaatgtaaaagcgag-taaataatacatttg 52925649  T
Q  237 agt 239  Q
    |||    
T  52925650 agt 52925652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 24916677 - 24916581
Alignment:
Q  103 gtttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgttt 197  Q
    ||||||||||| | ||||||||||| |||  ||  || |||||| ||||| |||||||| | ||| |||||||||||| ||||||||||| ||||||    
T  24916677 gtttggttctgcggtgacaaaaattaattttgaacgagttgattttgtaaaattgattcaggctaaaagtgagttgaatgtaaaatgatttatgttt 24916581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 32112158 - 32112070
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtg 218  Q
    ||||||||||||||||||||| ||||||| ||  || || ||||||||| | ||| | ||| ||||||||||  || ||||||||||||    
T  32112158 ttgagtgaattgattatgtaaaattgattatggataaaaatgagttgaatgaaaagtaatttatgtttggatttatttatgtaaaagtg 32112070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 51285697 - 51285625
Alignment:
Q  167 aagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||||| ||||| | ||||||| ||||||||||  ||||||||| | ||||||||| | ||||||||    
T  51285697 aagtgagttgaatgtaaagtaattcatgcttggatacattcatgtaaaagcgggttaaacaacaaatttgagt 51285625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 25129431 - 25129548
Alignment:
Q  103 gtttggttctgtgttgacaaaaattgat--tgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttgga 200  Q
    |||||||||| |  ||||| ||||||||  ||| |||||||||  ||||| |||||||| |  || |||||||||||| ||||  ||||| |||||||||    
T  25129431 gtttggttctctagtgacataaattgatcttgaatgaattgatgttgtaaaattgattcaggataaaagtgagttgaatgtaacgtgatttatgtttgga 25129530  T
Q  201 tacatctatgtaaaagtg 218  Q
    |  || ||||||||||||    
T  25129531 tgtatttatgtaaaagtg 25129548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 25181319 - 25181245
Alignment:
Q  129 attgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatac 203  Q
    ||||| |||||||||| ||||  ||||||| ||| || ||||||||| || ||||||| ||| ||||||||||||    
T  25181319 attgattgaattgattttgtagaattgattttgattaaaagtgagtttaatgtaaaattatttatgtttggatac 25181245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 31708166 - 31708252
Alignment:
Q  136 gaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    ||||||||| ||||| |||||||  ||||| ||||||||||  | |||| || ||  |||||||||||||  |||||||||||||||    
T  31708166 gaattgattttgtaaaattgattaggactaaaagtgagttgctgataaagtggtttgtgtttggatacattcatgtaaaagtgagtt 31708252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 31766168 - 31766242
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggataca 204  Q
    |||| |||||||||| ||||| ||| ||| ||  || ||||||||||||| |||| ||||| |||||||||||||    
T  31766168 ttgaatgaattgattttgtaaaattaattttggataaaagtgagttgaagttaaagtgatttatgtttggataca 31766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 30958201 - 30958100
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatg-attcatgtttggatacatctatgtaaaagtgagttaaacaa 228  Q
    |||| |||||||||| ||||| ||||||| || ||| | |||||||||| ||||| |  ||| ||||||||||| ||  |||||||||||| || |||||    
T  30958201 ttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaattgaacaa 30958102  T
Q  229 ta 230  Q
    ||    
T  30958101 ta 30958100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 30974013 - 30973912
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatg-attcatgtttggatacatctatgtaaaagtgagttaaacaa 228  Q
    |||| |||||||||| ||||| ||||||| || ||| | |||||||||| ||||| |  ||| ||||||||||| ||  |||||||||||| || |||||    
T  30974013 ttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaattgaacaa 30973914  T
Q  229 ta 230  Q
    ||    
T  30973913 ta 30973912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 7717381 - 7717429
Alignment:
Q  254 caatttcaagcttgaagtagaataaattttggaggcaaaatcacttcta 302  Q
    ||||||| ||||| ||||||||| |||| |||||||||||||| |||||    
T  7717381 caatttctagcttcaagtagaatcaattctggaggcaaaatcaattcta 7717429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 23264036 - 23263968
Alignment:
Q  135 tgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatac 203  Q
    |||||||||| ||||| ||||||||| | ||||||||||||||   | || |||||||||||| |||||    
T  23264036 tgaattgattgtgtaaaattgattctcattagaagtgagttgataatgaagtgattcatgtttcgatac 23263968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 32523223 - 32523326
Alignment:
Q  100 tacgtttggttctgtgttgacaaaaattgattga--gtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgttt 197  Q
    |||||||||||||  | |||||| ||||||||    |||||||||||| |||| ||||||| ||| || |||| |||||||| |||| |||||  |||||    
T  32523223 tacgtttggttcttcggtgacaagaattgattttaggtgaattgattaggtaaaattgattttgattaaaagttagttgaagataaagtgatttgtgttt 32523322  T
Q  198 ggat 201  Q
    ||||    
T  32523323 ggat 32523326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 41115288 - 41115368
Alignment:
Q  135 tgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaa 215  Q
    |||||||||| ||||  ||||||| || |||  | ||||||||| |||||||| || |||||||||||  |||||||||||    
T  41115288 tgaattgattttgtataattgattttggctaacaatgagttgaatgtaaaatggtttatgtttggatatgtctatgtaaaa 41115368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 48089618 - 48089686
Alignment:
Q  137 aattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacat 205  Q
    |||||||| | ||| |||||||||   || |||||||||||| ||||||||||| ||| ||||||||||    
T  48089618 aattgattctttaaaattgattctagttaaaagtgagttgaatgtaaaatgatttatgattggatacat 48089686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 22250406 - 22250281
Alignment:
Q  116 ttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaa 213  Q
    ||||||| ||||||||  ||| ||||||||| ||||| ||||||| |||||| ||| |||||||| || || ||||| |  |||||||||||  ||||||    
T  22250406 ttgacaacaattgattttgagggaattgattctgtaaaattgattatgactaaaagcgagttgaatgtgaagtgatttacatttggatacattcatgtaa 22250307  T
Q  214 aagtgagttaaacaatacatttgagt 239  Q
    |||||| |  ||||||| ||||||||    
T  22250306 aagtgaatcgaacaataaatttgagt 22250281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 24364084 - 24364169
Alignment:
Q  103 gtttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaat 186  Q
    |||||||| | || |||||||||||||||  || |||||||||||||||| ||||||||| |||| |||||| ||||| |||||||    
T  24364084 gtttggttttatgatgacaaaaattgattttgaatgaattgattatgtaaaattgattctcactaaaagtgatttgaatgtaaaat 24364169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 27096517 - 27096627
Alignment:
Q  128 gattgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaaca 227  Q
    ||||||||| || |||| ||||| ||||||| || ||||||| | |||||| ||||  ||||| ||||||| ||| || |||||||||||| ||| ||||    
T  27096517 gattgagtggatggattgtgtaaaattgattatggctagaagcgcgttgaatgtaaggtgatttatgtttgaatatatttatgtaaaagtgtgttgaaca 27096616  T
Q  228 atacatttgag 238  Q
    ||| |||||||    
T  27096617 ataaatttgag 27096627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 22683991 - 22683923
Alignment:
Q  167 aagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacattt 235  Q
    |||||||||||| |||||||| || ||||||||| |||| |||||||||| ||||| ||||||| ||||    
T  22683991 aagtgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaacaataaattt 22683923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 33843853 - 33843766
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||| ||| |||||||||| | ||||| ||||| ||||||||||| ||  |||||| |||||||| ||||||| ||| ||||    
T  33843853 attgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaattcgagt 33843766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 2206683 - 2206598
Alignment:
Q  137 aattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 222  Q
    |||||||| ||||| |||||||||||| | || |||||||||||| || ||||| || ||||||| |||  |||| ||||||||||    
T  2206683 aattgattttgtaaaattgattctgacgaaaattgagttgaaggtgaagtgatttatttttggatgcattaatgtgaaagtgagtt 2206598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 17898057 - 17898149
Alignment:
Q  137 aattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaata 230  Q
    |||||||| ||||  |||||||||| ||  |||||||||||| ||||| ||||| ||||||||||| || || |||||||||| || |||||||    
T  17898057 aattgattttgtataattgattctg-ctgaaagtgagttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtgaattgaacaata 17898149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 10185293 - 10185249
Alignment:
Q  195 tttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||    
T  10185293 tttggatacattaatgtaaaagtgagttaaacaataaatttgagt 10185249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 20911820 - 20911904
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaa 214  Q
    ||||||||||||||||||||| ||||||| || | | |  ||||||||||| ||||| ||| ||||||| ||||||  |||||||    
T  20911820 ttgagtgaattgattatgtaaaattgattatggcaaaagttgagttgaaggcaaaataatttatgtttgaatacattcatgtaaa 20911904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 43868328 - 43868205
Alignment:
Q  104 tttggttctgtgttgacaaaaattgatt--gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggat 201  Q
    ||||||||| || | | |||||||||||  || |||||||||| ||||| ||| |||||   || |||| ||||||| ||||| |||||  | |||||||    
T  43868328 tttggttctatggttataaaaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggat 43868229  T
Q  202 acatctatgtaaaagtgagttaaa 225  Q
    |||| ||||||||||||| |||||    
T  43868228 acatttatgtaaaagtgacttaaa 43868205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 55244775 - 55244671
Alignment:
Q  112 tgtgttgacaaaaattgatt-gagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatg 210  Q
    ||||||| |||||||| ||| | || ||||||| || ||| |||| ||| |||||  | |||||||||| ||||||| || |||||||||||||| ||||    
T  55244775 tgtgttggcaaaaattaatttgtgtaaattgatcatctaaaattggttccgactaacattgagttgaagataaaatggttaatgtttggatacatttatg 55244676  T
Q  211 taaaa 215  Q
    |||||    
T  55244675 taaaa 55244671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 4243541 - 4243442
Alignment:
Q  141 gattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgttt-ggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    |||||||||| |||||||| ||||| |||| || || ||||||| |||||  ||||| ||| ||||  ||||||||||||||  ||||||| ||||||||    
T  4243541 gattatgtaaaattgattccgactaaaagtaagatgtaggtaaagtgatttttgttttggagacattgatgtaaaagtgagtagaacaataaatttgagt 4243442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 34155857 - 34155811
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttg 176  Q
    ||||||||||| ||||||||| ||||||||| |||| ||||||||||    
T  34155857 ttgagtgaattaattatgtaaaattgattctaactaaaagtgagttg 34155811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 38740295 - 38740369
Alignment:
Q  130 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggataca 204  Q
    |||| |||||||||| ||||| ||||||| ||  || ||||||||||||| | || ||||| |||||||||||||    
T  38740295 ttgaatgaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttggataca 38740369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 55927747 - 55927800
Alignment:
Q  186 tgattcatgtttggatacatctatgtaaaagtgagttaaacaatacatttgagt 239  Q
    ||||| ||||||||||||||  |||||||||||| || ||||||| ||||||||    
T  55927747 tgatttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagt 55927800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 29778971 - 29779063
Alignment:
Q  126 ttgattgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtg 218  Q
    ||||||||| ||||||||| ||||| ||||||| ||  || ||||||||||||  |||| ||||| || |||||||  || | ||||||||||    
T  29778971 ttgattgagggaattgattgtgtaaaattgattatggataaaagtgagttgaatataaagtgatttatctttggatgtatttgtgtaaaagtg 29779063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 38716730 - 38716678
Alignment:
Q  152 attgattctgactagaagtgagttgaaggtaaaatgattcatgtttggataca 204  Q
    ||||||||||||||  ||||||||| ||||||||| ||| |||||| ||||||    
T  38716730 attgattctgactaagagtgagttgcaggtaaaataatttatgtttcgataca 38716678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 54487250 - 54487302
Alignment:
Q  167 aagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtga 219  Q
    |||||||||||| ||||| ||||| ||||||||||||||  |||| |||||||    
T  54487250 aagtgagttgaatgtaaattgatttatgtttggatacattgatgtgaaagtga 54487302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University