View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_high_4 (Length: 371)
Name: NF8530_high_4
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 27775721 - 27775377
Alignment:
| Q |
18 |
aaataacatgttcaaaacacacgtaaaaatattaatctattattgcactgtgtagtcttcctctttcttttcnnnnnnngtctcgaaattaacttttaaa |
117 |
Q |
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| T |
27775721 |
aaataacatgttcaaaacacacttaaaaatattaatctatcattgcaatgtgtagtcttcctctttcttttctctttttgtctcgaaattaacttttaaa |
27775622 |
T |
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| Q |
118 |
ttggtgctatttcaataatgcataaagacttaactaatatcaaccaatatctaactatcaaacaaataatttatttctttcaacagaagtaactaattcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775621 |
ttggtgctatttcaataatgcataaagacttaactaatttcaaccaatatctaactatcaaacaaataatttatttctttcaacagaagtaactaattcg |
27775522 |
T |
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| Q |
218 |
taggaccaaggttgacagacaattgcaagttgcatccacaagcaaactcgctattttctccacaagtttgtcattttatgattcaatcctcatattgaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775521 |
taggaccaaggttgacagacaattgcaagttgcatccacaagcaaactcgctattttctccacaagtttgtcattttatgattcaatcctcatattgaat |
27775422 |
T |
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| Q |
318 |
tataagcatggcttcttatgtatatttcagcatatttctctctgc |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775421 |
tataagcatggcttcttatgtatatttcagcatatttctctctgc |
27775377 |
T |
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