View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_high_9 (Length: 239)
Name: NF8530_high_9
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 180139 - 180367
Alignment:
| Q |
4 |
aatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctcag |
103 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180139 |
aatcatcaatcttcttctctcctccatgacaaaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctcag |
180238 |
T |
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| Q |
104 |
ttcaataacactgcacaaagggtgataagtccataactgattacttatttttagttaaaagtcttgttgacgaacttgcagttattgataagtctctttc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
180239 |
ttcaataacactgcacaaagggtgataagtccataactgattacttatttttagttaaaagtcttgctgacgaacttgcagttattgataagtctctttc |
180338 |
T |
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| Q |
204 |
tgatgatgatattaccctctttcttctca |
232 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
180339 |
tgatgatgatattaccctctttgttctca |
180367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 1700523 - 1700633
Alignment:
| Q |
4 |
aatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctcag |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1700523 |
aatcatcaatcttcttctctcctccatgacagaggctgacagcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctcag |
1700622 |
T |
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| Q |
104 |
ttcaataacac |
114 |
Q |
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||||||||||| |
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| T |
1700623 |
ttcaataacac |
1700633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 1700676 - 1700794
Alignment:
| Q |
114 |
ctgcacaaagggtgataagtccataactgattacttatttttagttaaaagtcttgttgacgaacttgcagttattgataagtctctttctgatgatgat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1700676 |
ctgcacaaagggtgataagtccataactgattacttattttcagttaaaagtcttgctgacgaacttgcagttattgataagtctctttctgatgatgat |
1700775 |
T |
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| Q |
214 |
attaccctctttcttctca |
232 |
Q |
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|||||||| ||| |||||| |
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| T |
1700776 |
attaccctatttgttctca |
1700794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 5399293 - 5399385
Alignment:
| Q |
5 |
atcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaa |
97 |
Q |
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| T |
5399293 |
atcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatgacactgctaaaaccttgtgggatgccattgaa |
5399385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 3540290 - 3540382
Alignment:
| Q |
5 |
atcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaa |
97 |
Q |
| |
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||||||||||||||| |||||| |||||||| || |||| || || ||||| |||||||| |||||| |||||| |||| ||| |||||| |
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| T |
3540290 |
atcatcaatcttcttatctcctttatgacagaagcagacagtatatcatttgcctcctatgacactgctaaaaccttgtgggatgccattgaa |
3540382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 26593819 - 26593779
Alignment:
| Q |
50 |
tcctttgcttcctatgaaactgctcgaaccttatgggttgc |
90 |
Q |
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|||||||| |||||||| |||||||||||| |||||||||| |
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| T |
26593819 |
tcctttgcctcctatgacactgctcgaaccctatgggttgc |
26593779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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