View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_1 (Length: 577)
Name: NF8530_low_1
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_1 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 49521522 - 49520946
Alignment:
| Q |
1 |
gaagcatcgcagaagcgaacagttatcagtttcataggcggtattgatctttgcgatggaagatatgatacaatggaacatcctttgttttcgacattga |
100 |
Q |
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| T |
49521522 |
gaagcatcgcagaagcgaacagttatcagtttcataggcggtattgatctttgcgatggaagatatgatacaatggaacatcctttgttttcaacattga |
49521423 |
T |
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| Q |
101 |
atacaatccatcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagct |
200 |
Q |
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| T |
49521422 |
atacaatccatcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagct |
49521323 |
T |
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| Q |
201 |
agaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagcaagttgggaagcaattcctattcccaattgaagtgcttgataga |
300 |
Q |
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| T |
49521322 |
agaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagcaagttgggaagcaattcctattcccaattgaagtgcttgataga |
49521223 |
T |
|
| Q |
301 |
attctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgatggtggagctgtttctaact |
400 |
Q |
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| T |
49521222 |
attctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgatggtggtgctgtttctaact |
49521123 |
T |
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| Q |
401 |
tccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaagacaacatcattgatagaagcattcaagatgcctatataaatgctatacg |
500 |
Q |
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| T |
49521122 |
tccctcaagcaccaaatgaagttatagaattaggccttgttagtggaaaagacaacatcattgatagaagcattcaagatgcctatataaatgctatacg |
49521023 |
T |
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| Q |
501 |
gagagcaataaactgcaactacattgaaaatcagtatttccgagggatttccgatggttggcattcaactgatatta |
577 |
Q |
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| T |
49521022 |
aagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcctatggttggcattcaactgatatta |
49520946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 140 - 272
Target Start/End: Complemental strand, 49510240 - 49510108
Alignment:
| Q |
140 |
caggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttga |
239 |
Q |
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| T |
49510240 |
caggtgcttctattaataaaggtggtcctagagagccatggcatgatattcattgtaaactagaaggacctgttgcttgggatgtgttgtgcaattttga |
49510141 |
T |
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| Q |
240 |
gcagaggtgggaaaagcaagttgggaagcaatt |
272 |
Q |
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| T |
49510140 |
gcaaagatgggaaaagcaagttggaaaacaatt |
49510108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 49510533 - 49510428
Alignment:
| Q |
40 |
ggtattgatctttgcgatggaagatatgatacaatggaacatcctttgttttcgacattgaatacaatccatcatgatgattttcatcaaccaaatttcc |
139 |
Q |
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| T |
49510533 |
ggtattgatctttgtgatgggagatatgataccatggaacatcctttgttttcaactctgaatacaattcatcatgatgattttcatcaaccaaatttcc |
49510434 |
T |
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| Q |
140 |
caggtg |
145 |
Q |
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|||||| |
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| T |
49510433 |
caggtg |
49510428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 352 - 539
Target Start/End: Complemental strand, 49510025 - 49509838
Alignment:
| Q |
352 |
tggagtgttcagttgtttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaag |
451 |
Q |
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| T |
49510025 |
tggaatgttcagttgtttagatcaatcgatgctggtgctgcttctggcttccctcaagatccaacagaagccgccgaaaaaggtcttgttactggaaaag |
49509926 |
T |
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| Q |
452 |
acaacatcattgatagaagcattcaagatgcctatataaatgctatacggagagcaataaactgcaactacattgaaaatcagtattt |
539 |
Q |
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| T |
49509925 |
ataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattt |
49509838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 44662302 - 44662438
Alignment:
| Q |
109 |
catcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggac |
208 |
Q |
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| T |
44662302 |
catcatgatgattttcatcagcctaactttcctggtgcttcaatagaaaaaggtggtcctagggaaccttggcatgatatccactcaaggcttgaaggtc |
44662401 |
T |
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| Q |
209 |
ctattgcatgggatgtgttgtacaattttgagcagag |
245 |
Q |
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| T |
44662402 |
ccattgcttgggatgttttgtttaactttgagcagag |
44662438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 2416753 - 2416636
Alignment:
| Q |
112 |
catgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggaccta |
211 |
Q |
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| T |
2416753 |
catgatgattttcatcaacctaactttccaggtgctgcaatcacaaaaggcggtccaagggaaccttggcatgacattcattcccgccttgaaggaccga |
2416654 |
T |
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| Q |
212 |
ttgcatgggatgtgttgt |
229 |
Q |
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| T |
2416653 |
ttgcttgggatgtgttgt |
2416636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 541
Target Start/End: Complemental strand, 2416399 - 2416327
Alignment:
| Q |
469 |
agcattcaagatgcctatataaatgctatacggagagcaataaactgcaactacattgaaaatcagtatttcc |
541 |
Q |
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| T |
2416399 |
agcattcaagatgcttatattaatgctattcggcgtgcaaagaacttcatctatattgaaaatcagtatttcc |
2416327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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