View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_12 (Length: 339)
Name: NF8530_low_12
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_12 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 65 - 326
Target Start/End: Original strand, 47580776 - 47581037
Alignment:
| Q |
65 |
gaacaatgttcatatttgcatgtagtctactggtacattttatgctgcggctagatatggaagtgcaacacctgtgccaccttctgttatcagccgcgga |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47580776 |
gaacaatgttcatatttgcatgtagtctactggtacattttatgctgcggctagatatggaagtgcaacacctgtgccaccttctgttatcagccgcgga |
47580875 |
T |
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| Q |
165 |
actggctggctggtaaggttcactacactttgaaattatttctggaatcatggacaagaaacttatgattgaattttatgtggcactcttattgttatct |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47580876 |
actggctggctggtaaggttcactacactttgaaattatttctggaatcatggacaagaaacttatgattgaattttatgtggcactcttattgttatct |
47580975 |
T |
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| Q |
265 |
tagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcagcatcagt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47580976 |
tagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcagcatcagt |
47581037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 42776 - 42673
Alignment:
| Q |
220 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42776 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttctgtaaccggaagtgcag |
42677 |
T |
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| Q |
320 |
catc |
323 |
Q |
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|||| |
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| T |
42676 |
catc |
42673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 27258707 - 27258604
Alignment:
| Q |
220 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
27258707 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttttgtaatcggaagtgcaa |
27258608 |
T |
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| Q |
320 |
catc |
323 |
Q |
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|||| |
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| T |
27258607 |
catc |
27258604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 46005748 - 46005840
Alignment:
| Q |
65 |
gaacaatgttcatatttgcatgtagtctactggtacattttatgctgcggctagatatggaagtgcaacacctgtgccaccttctgttatcag |
157 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
46005748 |
gaacaatgttcatatttgcatgtagtctactgctacattttatgttgcggctagatatggaagtgcaacccccgtgccaccttctgttatcag |
46005840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 8684597 - 8684683
Alignment:
| Q |
93 |
actggtacattttatgctgcggctagatatggaagtgcaacacctgtgccaccttctgttatcagccgcggaactggctggctggta |
179 |
Q |
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|||||||||| |||||||| || |||||||||||||| || || ||||| |||||| |||||||||||||| |||| ||| ||||| |
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| T |
8684597 |
actggtacatcctatgctgctgcaagatatggaagtgccacgccggtgccgccttctattatcagccgcggagctggttgggtggta |
8684683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 8684842 - 8684904
Alignment:
| Q |
264 |
ttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcagcatcagt |
326 |
Q |
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||||||||||| | ||||| | | ||||||||||||||||||||| |||| | |||||||||| |
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| T |
8684842 |
ttagggagtaggtgctttgtttagtggcatgtttggttgtgtaactggaactacagcatcagt |
8684904 |
T |
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