View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_13 (Length: 337)
Name: NF8530_low_13
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 51164343 - 51164116
Alignment:
| Q |
1 |
atctgaaagatggtcacaaattggagaagcactcttcgtcataatataaagagttgcaaaccaggcattcaaaaactaaatttcaattaaatacatgata |
100 |
Q |
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| T |
51164343 |
atctgaaagatggtcacaaattggagaagcactcttcgtcataatataaagagttgcaaaccaggcattcaaaaactaaatttcaattaaatacatgata |
51164244 |
T |
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| Q |
101 |
ttaaagatacaatggcttacaagccaaatatatgtccaaataacgccacnnnnnnnnnnnnnnnncaacgaaaatcagactagtgaagacctaaaaggga |
200 |
Q |
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| T |
51164243 |
ttaaagatacaatggtttacaagccaaatatatgtccaaataacgccac--aaaaaaaaaaaaaacaaagaaaatcagactagtgaagacctaaaaggga |
51164146 |
T |
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| Q |
201 |
ttggatgcagccctaagcttgcttcaaatg |
230 |
Q |
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| T |
51164145 |
ttggatgctgccctaagcttgcttcaaatg |
51164116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 51162060 - 51161998
Alignment:
| Q |
247 |
catatcaaaactttatcttgcatcattcagggtatattgaataaggaggttgttatcccgcac |
309 |
Q |
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| T |
51162060 |
catatcaaaactttatcttgcatcattcaggttatattgaataaggaggttgttatcccgcac |
51161998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 27839724 - 27839758
Alignment:
| Q |
174 |
atcagactagtgaagacctaaaagggattggatgc |
208 |
Q |
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| T |
27839724 |
atcagactagtgaagacccaaaagggattggatgc |
27839758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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