View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_15 (Length: 291)
Name: NF8530_low_15
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 24002011 - 24001858
Alignment:
| Q |
124 |
aaacggaagcctataaataactttgttttggttgataatataatctataaagggtaacatgaaattaaaaccaagtaatgatttctattaagaaattaaa |
223 |
Q |
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| T |
24002011 |
aaacggaagcctataaataactttgttttggttgacaatattatctataaagggtaacatgaaattaaaaccaagtaatgatttctattaagaaattaaa |
24001912 |
T |
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| Q |
224 |
agatccataaagaacaaatcaaaaaagaagtagaaagagcaaaccaacaatatg |
277 |
Q |
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| T |
24001911 |
agatccataaagaacaaatcaaaaaagaagtagaaagagcaaaacaacaatatg |
24001858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 23962088 - 23962230
Alignment:
| Q |
135 |
tataaataac-tttgttttggttgataatataatctataaagggtaacatgaaattaaaaccaagtaatgatttctattaagaaattaaaagatccataa |
233 |
Q |
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|||||||||| ||| |||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23962088 |
tataaataaccttttttttagttgctaatataactaataaagggtaacatgaaattaaaaccaagtaaaaatttctattaagaaattaaaagatccatgg |
23962187 |
T |
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| Q |
234 |
agaacaaatcaaaaaagaagtagaaagagcaaaccaacaatat |
276 |
Q |
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| T |
23962188 |
agcacaaatcaaaatagaagtaggaagaccaaagcaacaatat |
23962230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24002134 - 24002092
Alignment:
| Q |
1 |
cttggttagcaggtttgatattttgaacccgcgaactcaactc |
43 |
Q |
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| T |
24002134 |
cttggttagcaggtttgatattttgaacccgcgaactcaactc |
24002092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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