View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_16 (Length: 290)
Name: NF8530_low_16
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 13063601 - 13063856
Alignment:
| Q |
16 |
gacatcaattcctattttgtagaagagcgcttgaatgagataacacgtgatctattagtttaactaatggtcttgtgtttgaatcaaagtcatgaaaatc |
115 |
Q |
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| T |
13063601 |
gacatcaattcctattttgtagaagagcgcttgaatgagataacatgcgatctattagtttaactaatggtcttgtgtttgaatcaaagtcatgaaaatc |
13063700 |
T |
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| Q |
116 |
taatagcattaagaatcattgaagagagattttccgcatagtgatcctacgtcgctcgaagaatataagatctccacaattgcgcgcacaggtttacact |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13063701 |
taatagcattaagaatcattgaagagagattttccgcatagtgatcctacgtcgctcgaagaatataagatctccacaatt--gcgcacaggtttacact |
13063798 |
T |
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| Q |
216 |
aaaaaagaaaatttaatcaacccttccacaataattactaaatatatatctttgaagt |
273 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13063799 |
aaaaaagaaaatttaatcaacccttctacaataattactaaatatatatctttgaagt |
13063856 |
T |
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