View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_17 (Length: 281)
Name: NF8530_low_17
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 180484 - 180752
Alignment:
| Q |
1 |
gaagttgttcatgttgacattcaagtacctacagcgaatttcgctcatcacacctctccaaatcaacgcagctcaaaagatgattgtatccttccaattc |
100 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
180484 |
gaagctgttcaggttgacattcaagtacctacagcgaatttcgctcatcacacctctccaaatcaacgcagctcgaaagatgatggtatccttccaattc |
180583 |
T |
|
| Q |
101 |
catcctcggggcgtggtaacaatttctctaaacaatctcagtaccatggatccactactcgtgggtctaactatcttggtagaggtcgaggtttcaactc |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
180584 |
catccccggggcgtggtaacaatttctctaaacaatctcagtaccatggatccactactcgtgggtctaactatcgtggtagaggtcgaggtttcaactc |
180683 |
T |
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| Q |
201 |
atgtggaaatagacctccaccaagatgtcaactctgctctttccttggccatattgctaagtgatgtcc |
269 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
180684 |
atgtggaaatagacttccaccaagatgtcaactctgctctttccttggccatattgctaagtaatgtcc |
180752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 1700911 - 1701172
Alignment:
| Q |
1 |
gaagttgttcatgttgacattcaagtacctacagcgaatttcgctcatcacacctctccaaatcaacgcagctcaaaagatgattgtatccttccaattc |
100 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
1700911 |
gaagctgttcaggttgacattcaagtacctacagcgaatttcgctcatcacacctctccaaatcaacgcagctcaaaggatgatggtatccttccaattc |
1701010 |
T |
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| Q |
101 |
catcctcggggcgtggtaacaatttctctaaacaatctcagtaccatggatccactactcgtgggtctaactatcttggtagaggtcgaggtttcaactc |
200 |
Q |
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||||| | || |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1701011 |
catccacaggacgtggtaacaatttctctaaacaatcccagcaccatggatccaatactcgtgggtctaactatcgtggtagaggtcgaggtttcaactc |
1701110 |
T |
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| Q |
201 |
atgtggaaatagacctccaccaagatgtcaactctgctctttccttggccatattgctaagt |
262 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1701111 |
acgtggaaatagacctccaccaagatgtcaactctgctctttgcttggccatattgctaagt |
1701172 |
T |
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