View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_19 (Length: 241)
Name: NF8530_low_19
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 876783 - 876995
Alignment:
| Q |
19 |
tcaatgtcaatagagttgaaacctctttgaatcaagatatttttgaaacctcctcttaaatctctaatagaagtatcaattttattaatcagccatttga |
118 |
Q |
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| T |
876783 |
tcaatatcaatagagttgaaacctctttgaatcaagatatttttgaaacctcctcttaaatctctaacagaagtatcaattttattaatcagccatttga |
876882 |
T |
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| Q |
119 |
tttttctgaaaccnnnnnnntcaaagacgttgacaaagctaagaaactaaaacaaataaaattaattctgtgaaattatagataaaaataatagaagaga |
218 |
Q |
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| T |
876883 |
tttttctgaaaccaaaaaaatcaaagacgttgacaaagctaagaaactaaaacaaataaaattaattctgtgaaattatagataaaaataatagaagaga |
876982 |
T |
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| Q |
219 |
ttagaaacaaact |
231 |
Q |
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| T |
876983 |
ttagaaataaact |
876995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 846335 - 846449
Alignment:
| Q |
19 |
tcaatgtcaatagagttgaaacctctttgaatcaagatatttttgaaacctcctcttaaatctctaatagaagtatc--aattttat---taatcagcca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||| | |||||||| |
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| T |
846335 |
tcaatgtcaatagagttgaaacctctttgaatcaagacatttttgaaacttcctcttaaatctctaatattagtatcataattttattccttatcagcca |
846434 |
T |
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| Q |
114 |
tttgatttttctgaa |
128 |
Q |
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| T |
846435 |
tttgatttttctgaa |
846449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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