View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_2 (Length: 514)
Name: NF8530_low_2
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 24 - 423
Target Start/End: Original strand, 4444580 - 4444982
Alignment:
| Q |
24 |
tatatacatacttcatagtcactactgcaagaagcttggaacattgctatctatacatcaaacttggttgctgctgtctcaattggtttgattgagtcac |
123 |
Q |
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| T |
4444580 |
tatatatatacttcatagtcactactgcaagaagcttggaacattgctatctatacatcaaacttggttgctgctgtctcaattggtttgattgagtcac |
4444679 |
T |
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| Q |
124 |
aaaatgggataacccttggatgcataggcaatagcattgtctcaaa--------aacaaaagacctacccgactgctaacgatcagtaagtatcgaaatc |
215 |
Q |
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| T |
4444680 |
aaaaagggataacccttggatgcataggcaatagcattgtctcaaaaacccaaaaacaaaagacttacccgactgctaacgatcagtaagtatcgaaatc |
4444779 |
T |
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| Q |
216 |
aaccgggaaaaagggattcttgaatgttttttcattcatttcaaaaagccacgtttgcggctgctttgttgacaaaagagtaatttgttagaggttgcga |
315 |
Q |
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| T |
4444780 |
aactgggaagaagggattcttgaatgttttttcagtcatttc-aaaagccacgtttgcggctgcgttgttgacaaaagagtaatttgttagaggttgcaa |
4444878 |
T |
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| Q |
316 |
agttacacagttagagtcaccggacacacagaggcctcttctgtttattgtcgttaatgatcattgctaattccttgtttgtcaacatcatccctctaag |
415 |
Q |
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| T |
4444879 |
agttacacagttagagtcaccggacacac-gaggcctcttctgtttattgtcgttaatgatcattgc---ttccttgtttgtcaacatcatccctctaag |
4444974 |
T |
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| Q |
416 |
aaactcac |
423 |
Q |
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| T |
4444975 |
aaactcac |
4444982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 4445016 - 4445064
Alignment:
| Q |
451 |
aaccatagtcttgtttccttccattgtttgatttttctgtcttgttcat |
499 |
Q |
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| T |
4445016 |
aaccatagtcttgtttccttccattgtttgatttttctgtgttgttcat |
4445064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 37558797 - 37558671
Alignment:
| Q |
46 |
tactgcaagaagcttggaacattgctatctatacatcaaacttggttgctgctgtctcaattggtttgattgagtcacaaaatgggataacccttggatg |
145 |
Q |
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| T |
37558797 |
tactgcaagaggcttggaacattgctgtctatgcatcaaacctggttgctgctgcttcaattggtttgattgagtccaaaaaagggataacccttggatg |
37558698 |
T |
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| Q |
146 |
cataggcaatagcattgtctcaaaaac |
172 |
Q |
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| T |
37558697 |
cataggcaatagcattacctcaaaaac |
37558671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 192 - 323
Target Start/End: Complemental strand, 37558610 - 37558480
Alignment:
| Q |
192 |
taacgatcagtaagtatcgaaatcaaccgggaaaaagggattcttgaatgttttttcattcatttcaaaaagccacgtttgcggctgctttgttgacaaa |
291 |
Q |
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|||||| || |||||||| |||||||| ||||| ||||||| ||||| || ||||||| |||||| ||| |||| | | ||||| ||||||||||| |
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| T |
37558610 |
taacgaacaataagtatccaaatcaactgggaagaagggatccttgagtgatttttcagtcattttgaaa-gccaactccacagctgcattgttgacaaa |
37558512 |
T |
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| Q |
292 |
agagtaatttgttagaggttgcgaagttacac |
323 |
Q |
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||| ||||||| |||||||||||||||||||| |
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| T |
37558511 |
agaataatttggtagaggttgcgaagttacac |
37558480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 37558947 - 37558892
Alignment:
| Q |
24 |
tatatacatacttca-tagtcactactgcaagaagcttggaacattgctatctata |
78 |
Q |
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||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||| |
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| T |
37558947 |
tatatacatacttcactagtcactgctgcaagaggcttggaacattgctatatata |
37558892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 34257758 - 34257710
Alignment:
| Q |
124 |
aaaatgggataacccttggatgcataggcaatagcattgtctcaaaaac |
172 |
Q |
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|||| ||||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
34257758 |
aaaacgggataaccgttggatgcgtaggcaatagcattgcttcaaaaac |
34257710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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