View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_26 (Length: 206)
Name: NF8530_low_26
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 38171942 - 38171777
Alignment:
| Q |
18 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttttttgtctaaacgatgttatttgacaaatctattaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38171942 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttttttgtctaaacgatgttatttgacaaatctattaa |
38171843 |
T |
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| Q |
118 |
gttaa-tccactttatgcaatatgtcagttttttgattgaataatccattaattaggagcccaatgaatt |
186 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
38171842 |
gttaattccactttatgcaatatgtcagtttttttattgaataatcc----attaggagcccaatgaatt |
38171777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 38181536 - 38181680
Alignment:
| Q |
18 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttt--tttgtctaaacgatgttatttgacaaatctatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38181536 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttttctttgtctaaacgatactatttgacaaatctata |
38181635 |
T |
|
| Q |
116 |
aagttaa-tccactttatgcaatatgtcagttttttgattgaata |
159 |
Q |
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|| |||| || ||||||||||||||||||| ||||||| |||||| |
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| T |
38181636 |
aaattaattctactttatgcaatatgtcagatttttgaatgaata |
38181680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 38189595 - 38189451
Alignment:
| Q |
18 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttt--tttgtctaaacgatgttatttgacaaatctatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38189595 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttttctttgtctaaacgatactatttgacaaatctata |
38189496 |
T |
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| Q |
116 |
aagttaa-tccactttatgcaatatgtcagttttttgattgaata |
159 |
Q |
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|| |||| || ||||||||||||||||||| ||||||| |||||| |
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| T |
38189495 |
aaattaattctactttatgcaatatgtcagatttttgaatgaata |
38189451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 38208762 - 38208906
Alignment:
| Q |
18 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttt--tttgtctaaacgatgttatttgacaaatctatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38208762 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttttctttgtctaaacgatactatttgacaaatctata |
38208861 |
T |
|
| Q |
116 |
aagttaa-tccactttatgcaatatgtcagttttttgattgaata |
159 |
Q |
| |
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|| |||| || ||||||||||||||||||| ||||||| |||||| |
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| T |
38208862 |
aaattaattctactttatgcaatatgtcagatttttgaatgaata |
38208906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 38216820 - 38216676
Alignment:
| Q |
18 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttt--tttgtctaaacgatgttatttgacaaatctatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38216820 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttttctttgtctaaacgatactatttgacaaatctata |
38216721 |
T |
|
| Q |
116 |
aagttaa-tccactttatgcaatatgtcagttttttgattgaata |
159 |
Q |
| |
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|| |||| || ||||||||||||||||||| ||||||| |||||| |
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| T |
38216720 |
aaattaattctactttatgcaatatgtcagatttttgaatgaata |
38216676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 38456898 - 38457024
Alignment:
| Q |
17 |
agatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttttttgtctaaacgatgttatttgacaaatctatta |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| |
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| T |
38456898 |
agatataaaaagcttatattgtttgcaacacaacttttctgtatttttcttctgagaattgagttttttgtttaaacgatgttatttgacagatatatta |
38456997 |
T |
|
| Q |
117 |
agttaa-tccactttatgcaatatgtc |
142 |
Q |
| |
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| |||| || ||||||||||||||||| |
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| T |
38456998 |
aattaattctactttatgcaatatgtc |
38457024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 26032602 - 26032478
Alignment:
| Q |
18 |
gatataaaaagcttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagttttttgtctaaacgatgttatttgacaaatctattaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
26032602 |
gatataaaaagcttatagtgtttgcaacacaatgtttctgta-ttttgttctgagaattgagttttttgtctaaacgatgttatttgacagatgtattaa |
26032504 |
T |
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| Q |
118 |
gttaa-tccactttatgcaatatgtc |
142 |
Q |
| |
|
|||| || ||||||||||||||||| |
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| T |
26032503 |
attaattctactttatgcaatatgtc |
26032478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 38181719 - 38181748
Alignment:
| Q |
157 |
ataatccattaattaggagcccaatgaatt |
186 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
38181719 |
ataatccattaattaggagcccaatgaatt |
38181748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 38189412 - 38189383
Alignment:
| Q |
157 |
ataatccattaattaggagcccaatgaatt |
186 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
38189412 |
ataatccattaattaggagcccaatgaatt |
38189383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 38208945 - 38208974
Alignment:
| Q |
157 |
ataatccattaattaggagcccaatgaatt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
38208945 |
ataatccattaattaggagcccaatgaatt |
38208974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 38216637 - 38216608
Alignment:
| Q |
157 |
ataatccattaattaggagcccaatgaatt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
38216637 |
ataatccattaattaggagcccaatgaatt |
38216608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 53350788 - 53350735
Alignment:
| Q |
98 |
ttatttgacaaatctattaagtt-aatccactttatgcaatatgtcagtttttt |
150 |
Q |
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||||||||||||||||||||||| | || ||||||||||||||| ||||||||| |
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| T |
53350788 |
ttatttgacaaatctattaagttgattctactttatgcaatatgccagtttttt |
53350735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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