View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8530_low_4 (Length: 479)

Name: NF8530_low_4
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8530_low_4
NF8530_low_4
[»] chr5 (4 HSPs)
chr5 (25-276)||(4120051-4120300)
chr5 (336-473)||(4119915-4120052)
chr5 (261-467)||(39178538-39178745)
chr5 (25-259)||(21711821-21712053)
[»] chr7 (3 HSPs)
chr7 (256-473)||(30070370-30070589)
chr7 (256-434)||(36188271-36188451)
chr7 (56-113)||(3410066-3410123)
[»] chr2 (7 HSPs)
chr2 (267-467)||(18087172-18087374)
chr2 (256-473)||(27128220-27128437)
chr2 (263-398)||(20139760-20139899)
chr2 (282-444)||(20139588-20139754)
chr2 (65-118)||(24271125-24271178)
chr2 (63-118)||(24297058-24297113)
chr2 (412-473)||(2211516-2211578)
[»] chr8 (5 HSPs)
chr8 (256-400)||(5050894-5051038)
chr8 (25-259)||(24185033-24185265)
chr8 (256-361)||(6928391-6928497)
chr8 (63-127)||(16290547-16290611)
chr8 (261-305)||(15147556-15147600)
[»] chr3 (4 HSPs)
chr3 (256-467)||(54416291-54416503)
chr3 (259-380)||(1277985-1278108)
chr3 (63-127)||(25759716-25759780)
chr3 (358-472)||(19655258-19655373)
[»] scaffold0068 (1 HSPs)
scaffold0068 (25-259)||(1857-2089)
[»] chr4 (2 HSPs)
chr4 (256-398)||(22280891-22281034)
chr4 (314-391)||(9834576-9834654)
[»] scaffold0437 (1 HSPs)
scaffold0437 (25-259)||(10977-11209)
[»] chr6 (2 HSPs)
chr6 (256-369)||(31441293-31441408)
chr6 (63-127)||(20898659-20898723)
[»] scaffold0009 (1 HSPs)
scaffold0009 (63-127)||(1811-1875)
[»] chr1 (3 HSPs)
chr1 (63-115)||(14865216-14865268)
chr1 (182-225)||(19088479-19088522)
chr1 (91-133)||(19088569-19088611)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 25 - 276
Target Start/End: Complemental strand, 4120300 - 4120051
Alignment:
Q  25 ccatgtatggaatgacccctgtttgcttacatgtctgtacaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctacaagcat 124  Q
    |||||||||||||| |||||||||||| || |||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  4120300 ccatgtatggaatggcccctgtttgctaacctgtctgcacaacagttaccttcacgaaatatgtgagaagaaataatctgaataccaaggctacaagcat 4120201  T
Q  125 tataccatccattccgtagcaaaattggaat---agaagggttagagnnnnnnnnntcagcaatgcactagttgagtcactttccaaccatatattccac 221  Q
    ||||| |||  ||||| ||||||||||||||   |||||| |||||          ||||||||||||||||||||||||||||||||||||||||||||    
T  4120200 tatactatctgttccgaagcaaaattggaattaaagaaggattaga-----aaaaatcagcaatgcactagttgagtcactttccaaccatatattccac 4120106  T
Q  222 cacctattacctgttgcgtgctccatggctaatattatgatatactaaaagatta 276  Q
    ||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||    
T  4120105 cacctattatctcctgcatgctccatggctaatattatgatatactaaaagatta 4120051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 336 - 473
Target Start/End: Complemental strand, 4120052 - 4119915
Alignment:
Q  336 taaaatattaaaatgttgcatattttaattacaaaattttcttatacacgacaataacgattcaatcggccaatataaatttcatgatttactttctacc 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||||    
T  4120052 taaaatattaaaatgttgcatattttaattacaaaattttcttatacacgacaataacgattcaaccgactagtataaatttcatgatttactttctacc 4119953  T
Q  436 atttagaaagtttctttttatcctattttcatctcact 473  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  4119952 atttagaaagtttctttttaccctattttcatttcact 4119915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 261 - 467
Target Start/End: Complemental strand, 39178745 - 39178538
Alignment:
Q  261 atatactaaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaaatattaaaatgttgcata-tt 359  Q
    ||||||||||||||||| ||| |||||||| || ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  39178745 atatactaaaagattatcata-tttgtaatttactgtatgatacatacagtgtattcttatttcctcataagatataaaatattaaaatgttgcatattt 39178647  T
Q  360 ttaattacaaaattttcttatacacgacaataacgattcaatcggccaatataaatttcatgatttactttctaccatttagaaag-tttctttttatcc 458  Q
    |||||||||||| |||||||||| |||||| ||||||| || ||  |  || ||||||||||| |||| |||||  ||||| |||| ||| |||||||||    
T  39178646 ttaattacaaaagtttcttatacgcgacaaaaacgatttaaacgagctctacaaatttcatgacttaccttctataatttaaaaagttttgtttttatcc 39178547  T
Q  459 tattttcat 467  Q
    |||||||||    
T  39178546 tattttcat 39178538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 21711821 - 21712053
Alignment:
Q  25 ccatgtatggaatgacccctgtttgcttacatgtctgtacaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctacaagcat 124  Q
    ||||||||||| |||||| |||||||| || |||| | |||||| ||| ||||||| || ||||||||||| |||||| |||  ||||||| ||||||||    
T  21711821 ccatgtatggagtgacccttgtttgctaacctgtcagcacaacaattaccttcacggaatatgtgagaagaaataatccgaactccaaggcgacaagcat 21711920  T
Q  125 tataccatccattccgtagcaaaattggaatagaagggttagagnnnnnnnnntcagcaatgcactagttgagtcactttccaaccatatattccaccac 224  Q
    || | ||||  ||||| ||||||||||| ||  |||   | |||         | |||| |||||||| |||||||||||||||||||||||||||||||    
T  21711921 tagatcatctgttccgaagcaaaattgggattaaaga--tggagttgaaaaaattagcagtgcactagatgagtcactttccaaccatatattccaccac 21712018  T
Q  225 ctattacctgttgcgtgctccatggctaatattat 259  Q
    ||||||  || ||||||||||||||| || |||||    
T  21712019 ctattatgtgctgcgtgctccatggccaaaattat 21712053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 256 - 473
Target Start/End: Original strand, 30070370 - 30070589
Alignment:
Q  256 ttatgatatactaaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaaatattaaaatgttgca 355  Q
    |||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||    
T  30070370 ttatgatatacttaaagattattatagtttgtaatttattgtatgatacatatggtatattcttatttcctcataagatataaaatattaaaatgttaca 30070469  T
Q  356 ta-ttttaattacaaaattttcttatacacgacaataacgattcaatcggccaatataaatttcatgatttactttctaccatttagaaag-tttctttt 453  Q
    || |||||||||||||||||||| ||||||||||||||||||| ||  |     || |||||||||||||||| |||||||||||| |||| ||| ||||    
T  30070470 tatttttaattacaaaattttctaatacacgacaataacgattgaaatgagttgtacaaatttcatgatttaccttctaccatttaaaaagttttgtttt 30070569  T
Q  454 tatcctattttcatctcact 473  Q
    |||||||||||||| |||||    
T  30070570 tatcctattttcatttcact 30070589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 256 - 434
Target Start/End: Original strand, 36188271 - 36188451
Alignment:
Q  256 ttatgatatactaaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaaatattaaaatgttgca 355  Q
    |||||||||| ||||||||||||||||||| | || || | |  |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36188271 ttatgatatattaaaagattattataatttatgatttactatgcgatacaaatagtatattcttatttcctcgtaagatataaactattaaaatgttgca 36188370  T
Q  356 ta-ttttaattacaaaattttcttatacacgacaataacgattcaatcggccaatataaatttc-atgatttactttctac 434  Q
    || |||| |||| ||||||||||||| || | ||||||| |||||| ||  || || ||||||| ||||||||| ||||||    
T  36188371 tattttttattagaaaattttcttattcatgtcaataactattcaaacgagcactacaaatttctatgatttaccttctac 36188451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 3410123 - 3410066
Alignment:
Q  56 tgtctgtacaacagttatcttcacgaaagatgtgagaagagataatctgaataccaag 113  Q
    |||||| |||||||||| ||||||| || ||||||||||| |||| |||||| |||||    
T  3410123 tgtctgcacaacagttaccttcacggaaaatgtgagaagaaataacctgaattccaag 3410066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 267 - 467
Target Start/End: Complemental strand, 18087374 - 18087172
Alignment:
Q  267 taaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaaatattaaaatgttgcat-attttaatt 365  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  18087374 taaaagattattataatttgtaatttattatatgatacatatagtatattcttatttcctcataagatatcaaatattaaaatgttgcataattttaatt 18087275  T
Q  366 acaaaattttcttatacacgacaataacgattcaatcggccaatataaatttcatgatttactttctaccatttagaaag-tttctttttatcctatttt 464  Q
    ||||||||| ||||| ||||||| ||| ||||||| ||  |  || |||||||||||||||| |||||||||||| |||| ||| |||||||||||||||    
T  18087274 acaaaatttacttatgcacgacagtaatgattcaaacgagctctacaaatttcatgatttaccttctaccatttaaaaagttttgtttttatcctatttt 18087175  T
Q  465 cat 467  Q
    |||    
T  18087174 cat 18087172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 256 - 473
Target Start/End: Complemental strand, 27128437 - 27128220
Alignment:
Q  256 ttatgatatactaaaagattattataatttgtaatctat-tgtatgatacatatagtatattcttatttcctcgtaagatataaaatattaaaatgttgc 354  Q
    ||||||||||||||||| |||||||||||||||| |||| | ||||||||||||  |||||| |||||||||| |||||||||| |||||||||||||||    
T  27128437 ttatgatatactaaaaggttattataatttgtaa-ctatctatatgatacatat--tatatttttatttcctcataagatataatatattaaaatgttgc 27128341  T
Q  355 atatttt-aattacaaaattttcttatacacgacaataacgattcaatcggccaatataaatttcatgatttactttctaccatttagaaag-tttcttt 452  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||  |  || |||||||||||  ||| || | |||||||||||| ||| |||    
T  27128340 atatttttaattacaaaattttcttatacacgacaataacgattcaaacgagctttacaaatttcatgaaatacctttttccatttagaaagttttgttt 27128241  T
Q  453 ttatcctattttcatctcact 473  Q
    ||||||||||||||| |||||    
T  27128240 ttatcctattttcatttcact 27128220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 263 - 398
Target Start/End: Complemental strand, 20139899 - 20139760
Alignment:
Q  263 atactaaaagattattataatttgtaatctattgtatgatacatatagta---tattcttatttcctcgtaagatataaaatattaaaatgttgcata-t 358  Q
    |||||||||||||||||| |||||| || |||||||||||||||||| ||   |||| |||||| |||  |  ||||||| ||||||||||||||||| |    
T  20139899 atactaaaagattattatgatttgtgatttattgtatgatacatataatatattattattattttctcaaacaatataaactattaaaatgttgcatatt 20139800  T
Q  359 tttaattacaaaattttcttatacacgacaataacgattc 398  Q
    ||| |||||||||||||| ||| || |||||||| |||||    
T  20139799 ttttattacaaaattttcgtatgcatgacaataatgattc 20139760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 20139754 - 20139588
Alignment:
Q  282 atttgtaatctattgtatgatacatatagtatattcttatt---tcctcgtaagatataaaatattaaaatgttgcatatttta-attacaaaattttct 377  Q
    |||||| || |||||||||||||| ||| |||||| |||||   | |||  | |||||||| |||||||||||||||||||||  |||||||||||||||    
T  20139754 atttgtgatttattgtatgatacagataatatattattattattttctcaaatgatataaactattaaaatgttgcatattttttattacaaaattttct 20139655  T
Q  378 tatacacgacaataacgattcaatcggccaatataaatttcatgatttactttctaccatttagaaa 444  Q
    ||| || |||||||||||||| | ||  |  || |||| | ||||||||| ||||| ||||||||||    
T  20139654 tatgcatgacaataacgattctaacgagctctacaaatcttatgatttaccttctatcatttagaaa 20139588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 24271125 - 24271178
Alignment:
Q  65 aacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctac 118  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||| ||||    
T  24271125 aacagttaccttcatgaaagatgtgagaagaaataatctgaataccaagactac 24271178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 24297113 - 24297058
Alignment:
Q  63 acaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctac 118  Q
    |||||||||| ||||| |||||||||||||||| || |||||||||||||| ||||    
T  24297113 acaacagttaccttcatgaaagatgtgagaagaaatgatctgaataccaagactac 24297058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 473
Target Start/End: Original strand, 2211516 - 2211578
Alignment:
Q  412 aaatttcatgatttactttctaccatttagaaag-tttctttttatcctattttcatctcact 473  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||| |||||    
T  2211516 aaatttcatgatttacttcctaccatttagaaagttttatttttattttattttcatttcact 2211578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 256 - 400
Target Start/End: Original strand, 5050894 - 5051038
Alignment:
Q  256 ttatgatatactaaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaaatattaaaatgttgca 355  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| || || |||||||||||||||      
T  5050894 ttatgatatacaaaaagattattataatttgtaaattattgtatgatacatatagtatattgttatttcctcataaaatgtataatattaaaatgttgtg 5050993  T
Q  356 tattttaattacaaaattttcttatacacgacaataacgattcaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5050994 tattttaattacaaaattttcttatacacgacaataacgattcaa 5051038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 24185033 - 24185265
Alignment:
Q  25 ccatgtatggaatgacccctgtttgcttacatgtctgtacaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctacaagcat 124  Q
    ||||| ||||| |||||| |||||||| || |||| | |||||| ||| ||||||| || |||||||| || ||||||  ||  ||||||| ||||||||    
T  24185033 ccatgaatggagtgacccttgtttgctaacctgtcagcacaacaattaccttcacggaatatgtgagaggaaataatccaaactccaaggcgacaagcat 24185132  T
Q  125 tataccatccattccgtagcaaaattggaatagaagggttagagnnnnnnnnntcagcaatgcactagttgagtcactttccaaccatatattccaccac 224  Q
    || ||||||  ||||| ||||||||||  ||  |||   | |||         | |||| |||||||| |||||||||||||||||||||||||||||||    
T  24185133 tagaccatctgttccgaagcaaaattgagattaaaga--tggagttgaaaaaattagcagtgcactagatgagtcactttccaaccatatattccaccac 24185230  T
Q  225 ctattacctgttgcgtgctccatggctaatattat 259  Q
    ||||||  || ||||||||||||||| || |||||    
T  24185231 ctattatgtgctgcgtgctccatggccaaaattat 24185265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 361
Target Start/End: Complemental strand, 6928497 - 6928391
Alignment:
Q  256 ttatgatatactaaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaa-atattaaaatgttgc 354  Q
    |||||||||||||||  ||||||||||||||| ||  | ||||||||||| |||||||||| |||||| ||| |||||||||||  |||||||||||||     
T  6928497 ttatgatatactaaacaattattataatttgtgattgagtgtatgatacaaatagtatatttttattttctcataagatataaacttattaaaatgttga 6928398  T
Q  355 atatttt 361  Q
    |||||||    
T  6928397 atatttt 6928391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 16290611 - 16290547
Alignment:
Q  63 acaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctacaagcattat 127  Q
    ||||| |||| |||||||||||||||||||||||| |||||||||||||||| |||  |||||||    
T  16290611 acaacggttaccttcacgaaagatgtgagaagagaaaatctgaataccaaggttacgggcattat 16290547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 15147556 - 15147600
Alignment:
Q  261 atatactaaaagattattataatttgtaatctattgtatgataca 305  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  15147556 atatactaaaagattattataatttgtaatttattttatgataca 15147600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 256 - 467
Target Start/End: Original strand, 54416291 - 54416503
Alignment:
Q  256 ttatgatatactaaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaaatattaaaatgttgca 355  Q
    ||||||||| ||||||||  |||||||||| | || || |||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  54416291 ttatgatatcctaaaagacaattataatttatgatttactgtatgatacatattgtattttcttatttcctcataagatataaactattaaaatgttgca 54416390  T
Q  356 t-attttaattacaaaattttcttatacacgacaataacgattcaatcggccaatataaatttcatgatttactttctaccatttagaaagtttcttttt 454  Q
    |  |||||||||||||||||||||||  | || ||||||||||| | ||  |  || || |||||||| |||| || | ||||||| |||||||  ||||    
T  54416391 tgtttttaattacaaaattttcttatggatgataataacgattcgaacgagctctacaattttcatgacttaccttatgccatttataaagttttatttt 54416490  T
Q  455 atcctattttcat 467  Q
    || ||||||||||    
T  54416491 attctattttcat 54416503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 380
Target Start/End: Complemental strand, 1278108 - 1277985
Alignment:
Q  259 tgatatactaaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaa-atattaaaatgttgcata 357  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| | |||| |||||||||||||||| |||||| ||||  | |||||||| ||||||    
T  1278108 tgatatactaaatgattattataatttgtaatttattgtatgatatagatagcatattcttatttcctcataagatgtaaactttttaaaatgctgcata 1278009  T
Q  358 -ttttaattacaaaattttcttat 380  Q
     ||||||||||||| || ||||||    
T  1278008 tttttaattacaaagttgtcttat 1277985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 25759780 - 25759716
Alignment:
Q  63 acaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctacaagcattat 127  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||  |||||||    
T  25759780 acaacggttaccttcacgaaagatgtgagaagagataatctgaataccaaggttacgggcattat 25759716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 472
Target Start/End: Complemental strand, 19655373 - 19655258
Alignment:
Q  358 ttttaattacaaaattttcttatacacgacaataacgattcaatcggccaatataaatttcatgatttactttctaccatttagaaagt-ttctttttat 456  Q
    ||||||||||||||||||||||| || |||||||| ||||||| ||  |  || || ||||||||| ||||||||| |||||| ||||| || |||||||    
T  19655373 ttttaattacaaaattttcttatgcatgacaataatgattcaaacgagctctacaattttcatgatctactttctatcatttataaagtattgtttttat 19655274  T
Q  457 cctattttcatctcac 472  Q
     |||||||||| ||||    
T  19655273 tctattttcatttcac 19655258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 2089 - 1857
Alignment:
Q  25 ccatgtatggaatgacccctgtttgcttacatgtctgtacaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctacaagcat 124  Q
    ||||||||||| |||||| |||||||| || |||| | |||||| ||| ||||||| || ||||||||||| |||||| |||  ||||||| ||||||||    
T  2089 ccatgtatggagtgacccttgtttgctaacctgtcagcacaacaattaccttcacggaatatgtgagaagaaataatccgaactccaaggcgacaagcat 1990  T
Q  125 tataccatccattccgtagcaaaattggaatagaagggttagagnnnnnnnnntcagcaatgcactagttgagtcactttccaaccatatattccaccac 224  Q
    || | ||||  ||||| ||||||||||| ||  |||   | |||         | |||| |||||||| |||||||||||||||||||||||||||||||    
T  1989 tagatcatctgttccgaagcaaaattgggattaaaga--tggagttgaaaaaattagcattgcactagatgagtcactttccaaccatatattccaccac 1892  T
Q  225 ctattacctgttgcgtgctccatggctaatattat 259  Q
    ||||||  || ||||||||||||||| || |||||    
T  1891 ctattatgtgctgcgtgctccatggccaaaattat 1857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 398
Target Start/End: Complemental strand, 22281034 - 22280891
Alignment:
Q  256 ttatgatatactaaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaaatattaaaatgttgca 355  Q
    |||||||||| ||||||||||||||||||| | || |||||||||||| | ||| ||||||||||||| ||| |||| |||||| |||||||||||||||    
T  22281034 ttatgatatattaaaagattattataatttatgatttattgtatgatataaataatatattcttattttctcataaggtataaactattaaaatgttgca 22280935  T
Q  356 t-attttaattacaaaattttcttatacacgacaataacgattc 398  Q
    |  |||| |||| ||||||||  ||| || ||||||||| ||||    
T  22280934 tgttttttattataaaatttttgtatgcatgacaataacaattc 22280891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 9834654 - 9834576
Alignment:
Q  314 attcttatttcctcgtaagatataaaatattaaaatgttgcatatttt-aattacaaaattttcttatacacgacaata 391  Q
    |||| |||||||||  || ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||    
T  9834654 attcatatttcctcaaaaaatataaaatattaaaatattggatatttttaattacaaaattttcttatacacgagaata 9834576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 11209 - 10977
Alignment:
Q  25 ccatgtatggaatgacccctgtttgcttacatgtctgtacaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctacaagcat 124  Q
    ||||| ||||| |||||| |||||||| || |||| | |||||| ||| ||||||| || |||||||| ||  ||||| |||  ||||||| ||||||||    
T  11209 ccatgaatggagtgacccttgtttgctaacctgtcagcacaacaattaccttcacggaatatgtgagaggaactaatccgaactccaaggcgacaagcat 11110  T
Q  125 tataccatccattccgtagcaaaattggaatagaagggttagagnnnnnnnnntcagcaatgcactagttgagtcactttccaaccatatattccaccac 224  Q
    || ||||||  ||||| ||||||||||| ||  |||   | |||         | |||| |||||||| |||||||||||||||||||||||||||||||    
T  11109 tagaccatctgttccgaagcaaaattgggattaaaga--tggagttgaaaaaattagcactgcactagatgagtcactttccaaccatatattccaccac 11012  T
Q  225 ctattacctgttgcgtgctccatggctaatattat 259  Q
    ||||||  || ||||||||||||||| || |||||    
T  11011 ctattatgtgctgcgtgctccatggccaaaattat 10977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 369
Target Start/End: Complemental strand, 31441408 - 31441293
Alignment:
Q  256 ttatgatatactaaaagattattataatttgtaatctattgtatgatacatatagtatattcttatttcctcgtaagatataaa-atattaaaatgttgc 354  Q
    |||||||||||||||||||||||||||||||| || |||||||||||| | || ||||||  |||||| ||| |||||||||||  ||||||| ||||||    
T  31441408 ttatgatatactaaaagattattataatttgtgatttattgtatgatataaatggtatatatttattttctcataagatataaacttattaaactgttgc 31441309  T
Q  355 ata-ttttaattacaa 369  Q
    ||| ||||||||||||    
T  31441308 atatttttaattacaa 31441293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 20898723 - 20898659
Alignment:
Q  63 acaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctacaagcattat 127  Q
    ||||| |||| |||||||||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  20898723 acaacggttaacttcacgaaagatgtgagaagaaataatctgaataccaagggtacgagcattat 20898659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 1811 - 1875
Alignment:
Q  63 acaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggctacaagcattat 127  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  1811 acaacggttaccttcacgaaagatgtgagaagagataatctgaataccaaggttacaggcattat 1875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 14865268 - 14865216
Alignment:
Q  63 acaacagttatcttcacgaaagatgtgagaagagataatctgaataccaaggc 115  Q
    |||||||||| |||||||||||||||||||||| |||| ||||| ||||||||    
T  14865268 acaacagttaccttcacgaaagatgtgagaagaaataacctgaacaccaaggc 14865216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 19088522 - 19088479
Alignment:
Q  182 caatgcactagttgagtcactttccaaccatatattccaccacc 225  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  19088522 caatgcactagttgagtcactttccaaccagatattccgccacc 19088479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 19088611 - 19088569
Alignment:
Q  91 gaagagataatctgaataccaaggctacaagcattataccatc 133  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||    
T  19088611 gaagaaataatctgaattccaaggctacgagcattataccatc 19088569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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