View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8530_low_6 (Length: 431)
Name: NF8530_low_6
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 42095554 - 42095341
Alignment:
| Q |
17 |
cacttgccttggttaataactttgcctccaagcatcgttaactatgtacata----cttgtgaaaagtgacataagccgtatgatagtttgttgtttaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42095554 |
cacttgccttggttaataactttgcctccaagcatcgttaactatttacatatatacttgtgaaaagtgacataagccgtatgatagtttgttgtttaat |
42095455 |
T |
|
| Q |
113 |
ttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactatatttagttctaggaagtgnnnnnnnngcaactgtaaccatgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
42095454 |
ttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactatatttagttcttggaagtgttttttttgcaactgtaaccgtgt |
42095355 |
T |
|
| Q |
213 |
cgtgcaagatcata |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42095354 |
cgtgcaagatcata |
42095341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 266 - 420
Target Start/End: Complemental strand, 42095301 - 42095147
Alignment:
| Q |
266 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatatttttcgaaggggaaggggc |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42095301 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatatttttcgaaggggaaggggc |
42095202 |
T |
|
| Q |
366 |
actcataatctcaagttcgactaatgttgtttcaattttactattttcttctcac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42095201 |
actcataatctcaagttcgactaatgttgtttcaattttactatttccttctcac |
42095147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University