View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8530_low_9 (Length: 372)
Name: NF8530_low_9
Description: NF8530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8530_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 361
Target Start/End: Original strand, 1928058 - 1928398
Alignment:
| Q |
21 |
tgctaaaaacactactatagacatgaaaaatgagtaaaagaaatttctctataaataatgtaaatggtttgaaaatccattataacaatatatnnnnnnn |
120 |
Q |
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| T |
1928058 |
tgctaaaaacactactatagacatgaaaaatgagtaaaagaaatttctctataaataatgtaaatggtttgaaaatccattataacaatatataaaaaaa |
1928157 |
T |
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| Q |
121 |
ngcatcgtacatgattatattttgtacacaggttgtagtggacagctaaataatttgaaaatccaaaagacacttaacaacaactacaactaaaaccctt |
220 |
Q |
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| T |
1928158 |
agcatcgtacatgattatattttgtacacaggttgtagtggacagctaaataatttgaaaatccaaaagacacttaacaacaactacaactaaaaccctt |
1928257 |
T |
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| Q |
221 |
actaggtgcggttaactacatgggatcgaacaatgctataatatcctatcatgaatcatgcctgctgagactgcttatatccaaatccctctagatagtt |
320 |
Q |
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| T |
1928258 |
actaggtgcggttaactacatgggatcgaacaatgctataatatcctatcatgaatcatgcctgctgagactgcttatatccaaatccctctagatagtt |
1928357 |
T |
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| Q |
321 |
tgacnnnnnnnctcttaatctctctgagccactaactattg |
361 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
1928358 |
tgacaaaaaaactcttaatctctctgagccactaactattg |
1928398 |
T |
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