View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8531_high_10 (Length: 269)
Name: NF8531_high_10
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8531_high_10 |
 | |
|
| [»] chr7 (19 HSPs) |
| |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 21689785 - 21689534
Alignment:
| Q |
18 |
cataggccctggttcaacaagcctgcctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatca |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21689785 |
cataggccctggttcaacaagcctgtctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatca |
21689686 |
T |
|
| Q |
118 |
aagccttcgagagaatttctggtcaatgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21689685 |
aagccttcgagagaatttccggtcaatgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct |
21689586 |
T |
|
| Q |
218 |
gaatgcttccagtgtttttgatgtattttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21689585 |
gaatgcttccagtgtttttgatgtattttgctgcccacataagcttgtactt |
21689534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 21682017 - 21681771
Alignment:
| Q |
23 |
gccctggttcaacaagcctgcctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagcc |
122 |
Q |
| |
|
||||||||||| |||| || |||||||||||||| |||||||| ||||||||||| ||||||||||| |||| |||||||||||| |||| | |||| |
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|
| T |
21682017 |
gccctggttcataaagcatggttttctccaagatatgtagcaaagaacatccatccacgaacaacatccatgataacttttcttcaaggctatgatagcc |
21681918 |
T |
|
| Q |
123 |
ttcgagagaatttctggtcaatgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatg |
222 |
Q |
| |
|
||| ||||| | | ||| || ||||||||||| || |||||| ||||||| || ||||||||||||| |||| ||||||| ||||||| | |||||| |
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|
| T |
21681917 |
ttcaagagactcgccggttaaagttaaaacatcgtcgctaaaatggcccttcaattcatcaatgttatcagcaatttttttgtatagatccttttgaatg |
21681818 |
T |
|
| Q |
223 |
cttccagtgtttttgatgtattttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21681817 |
cttccagtgtttttgatgtattttgctgcccacataagcttgtactt |
21681771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 21714550 - 21714304
Alignment:
| Q |
23 |
gccctggttcaacaagcctgcctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagcc |
122 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
21714550 |
gccctggttcatcaagcttggctctctccaagatatgaagcaaagaacatccatccacgaacaacatccacgatagcttttcttcaaggctaccaaagcc |
21714451 |
T |
|
| Q |
123 |
ttcgagagaatttctggtcaatgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaat |
221 |
Q |
| |
|
||| ||||| ||||| | | ||||||||| | ||||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||| |||| |
|
|
| T |
21714450 |
ttcaagagaccaactggttgaagctaaaacatcgttgtcaaaatgacccttcagttcatcaatgttatctgcaatctttttgtgtagat-cctctggaat |
21714352 |
T |
|
| Q |
222 |
gcttccagtgtttttgatgtattttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
21714351 |
gtgtctggtgttttctatgtattttgctgcccacataagtttgtactt |
21714304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 21788596 - 21788350
Alignment:
| Q |
23 |
gccctggttcaacaagcctgcctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagcc |
122 |
Q |
| |
|
|||| |||||| ||||| || ||||||| |||||||| | |||||| ||||||||||| |||||||||||||| ||||||||||| || || ||||||| |
|
|
| T |
21788596 |
gcccaggttcatcaagcttggctttctctaagatatacaacaaagaacatccatccacgaacaacatccacgacagcttttcttcgaggcttccaaagcc |
21788497 |
T |
|
| Q |
123 |
ttcgagagaatttctggtcaatgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaat |
221 |
Q |
| |
|
||| ||||| || | || || ||||||||||| || |||||||||||||||||| |||||||||||| |||| |||||||| |||| ||||| |||| |
|
|
| T |
21788496 |
ttcaagagacttgccagttaaagttaaaacatcgtcgccaaaatgacccttcagttcatcaatgttatctgcaatctttttgtgcagat-cctctggaat |
21788398 |
T |
|
| Q |
222 |
gcttccagtgtttttgatgtattttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21788397 |
gtgtccagtgttttcgatgtattttgctgcccacataagcttgtactt |
21788350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 49 - 269
Target Start/End: Complemental strand, 15713964 - 15713744
Alignment:
| Q |
49 |
tccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatgtta |
148 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| || ||| |||| |||| || || |||| ||| || |||| |
|
|
| T |
15713964 |
tccaagatatgcagcaaagagcatccatccacgaacaacatccatgacagcttttcttctaggctaccaaatccttgaagtgactttccggttaaagtta |
15713865 |
T |
|
| Q |
149 |
aaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgtattttg |
247 |
Q |
| |
|
||||||| ||| |||||||| |||||||| ||||||||||||| |||| |||||||| || | ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15713864 |
aaacatcgtcactaaaatgacacttcagttcatcaatgttatcagcaatctttttgtgcag-ttcctctagaatgcttccagtgtttttgatgtattttg |
15713766 |
T |
|
| Q |
248 |
ctgcccacataagcttgtactt |
269 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
15713765 |
ccgcccacataagcttgtactt |
15713744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 268
Target Start/End: Complemental strand, 21726242 - 21726018
Alignment:
| Q |
44 |
ctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaa |
143 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| ||||||| | ||||| |||||| | |
|
|
| T |
21726242 |
ctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctacgaaagcctgcaagagaccatctggttga |
21726143 |
T |
|
| Q |
144 |
tgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgta |
242 |
Q |
| |
|
| ||||||||| || ||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||| ||| ||||||| ||||| |
|
|
| T |
21726142 |
agctaaaacatcgtcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagat-cctctggaatgtgtccggtgttttctatgta |
21726044 |
T |
|
| Q |
243 |
ttttgctgcccacataagcttgtact |
268 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
21726043 |
ttttgctgcccacataagtttgtact |
21726018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 21623560 - 21623314
Alignment:
| Q |
23 |
gccctggttcaacaagcctgcctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagcc |
122 |
Q |
| |
|
||||||||||| |||| || || | |||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||||| || ||| ||||||| |
|
|
| T |
21623560 |
gccctggttcatgaagcttggctgtatccatgatatgcagcaaagaacatccatccacgaacaacatccacgacagcttttctttaatgctaccaaagcc |
21623461 |
T |
|
| Q |
123 |
ttcgagagaatttctggtcaatgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatg |
222 |
Q |
| |
|
||| ||||| |||| ||| || ||||||||||| ||| ||||||||||||||||| |||||| |||||| |||| || ||||| | |||| |||||| |
|
|
| T |
21623460 |
ttcaagagactttccggttaaagttaaaacatcgtcactaaaatgacccttcagttcatcaatattatcagcaatcttgttgtgcatatccttctgaact |
21623361 |
T |
|
| Q |
223 |
cttccagtgtttttgatgtattttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21623360 |
tttctggtgtttttgatgtattttgctgcccacataagcttgtactt |
21623314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 266
Target Start/End: Complemental strand, 21647114 - 21646867
Alignment:
| Q |
23 |
gccctggttcaacaagcctgcctttctccaagatataaagcaaagagcatccat----ccaccaacaacatccacgatagcttttcttcaagactatcaa |
118 |
Q |
| |
|
||||||||||| |||| || ||||||| ||||||| |||||||| ||||||| |||| ||||| |||||||| | |||||||||||| ||| | |
|
|
| T |
21647114 |
gccctggttcatgaagcttggctttctctaagatatgcagcaaagaacatccatatatccacgaacaatatccacgacaacttttcttcaaggctacgga |
21647015 |
T |
|
| Q |
119 |
agccttcgagagaatttctggtcaatgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctg |
218 |
Q |
| |
|
|||||| ||||| || | |||||| |||||||| || || ||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||| |
|
|
| T |
21647014 |
agcctttaagagacttgccggtcaaagttaaaacgtcgtcgctaaaatgacccttcagttcatcaatgttatctacaatctttttgtgtagatccttctt |
21646915 |
T |
|
| Q |
219 |
aatgcttccagtgtttttgatgtattttgctgcccacataagcttgta |
266 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21646914 |
aattcttcccgtgtttttgatgtattttgctgcccacataagcttgta |
21646867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 21772307 - 21772082
Alignment:
| Q |
44 |
ctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaa |
143 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||||||| | |||||||||||| ||| ||||||| | ||||| |||||| | |
|
|
| T |
21772307 |
ctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttga |
21772208 |
T |
|
| Q |
144 |
tgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgta |
242 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||| ||| | |||| ||||| |
|
|
| T |
21772207 |
agttaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagat-cctctggaatgtatccgttattttctatgta |
21772109 |
T |
|
| Q |
243 |
ttttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
21772108 |
ttttgctgcccacataagtttgtactt |
21772082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 49 - 269
Target Start/End: Complemental strand, 21664442 - 21664219
Alignment:
| Q |
49 |
tccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatgtta |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |||||||||| ||||| || | ||| || |||| |
|
|
| T |
21664442 |
tccaagatataaagcaaagagcatccatccacgaacaatatccacgacagcttttcttcaaggcttccaaagccttcaagagacttgccggttaaagtta |
21664343 |
T |
|
| Q |
149 |
aa---acatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgtattt |
245 |
Q |
| |
|
|| ||||| || ||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||| || || || || |||| |||||||| |
|
|
| T |
21664342 |
aaattacatcatcgtcaaaatgacccttcagttcatcgatgttatcaaaaatctttttgtgtagatcccgtggattgagtcttgtattttcaatgtattt |
21664243 |
T |
|
| Q |
246 |
tgctgcccacataagcttgtactt |
269 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
21664242 |
tgctgcccacataagcttgtactt |
21664219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 47 - 213
Target Start/End: Original strand, 21807970 - 21808136
Alignment:
| Q |
47 |
tctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatgt |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| |||||||||| ||||| | | ||| || || |
|
|
| T |
21807970 |
tctccaagatataaagcaaagagcatccatccacgaacaacatccatgacagcttttcttcaaggctaccaaagccttcaagagactggccggttaaagt |
21808069 |
T |
|
| Q |
147 |
taaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatcc |
213 |
Q |
| |
|
||||||||| || |||||||||||||||||| ||| ||||||||| |||| ||||||||||||||| |
|
|
| T |
21808070 |
taaaacatcgtcgccaaaatgacccttcagttcatcgatgttatcagcaatctttttgtgtagatcc |
21808136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 21628471 - 21628246
Alignment:
| Q |
44 |
ctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||| ||||| |||| || || |
|
|
| T |
21628471 |
ctttctccaagatataaagcaaagagcatccatccacgaacaacatccacgacagcttttcttcaaggcatccaaagccttgaagagagtttcccgttaa |
21628372 |
T |
|
| Q |
144 |
tgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgta |
242 |
Q |
| |
|
|||||||||| || |||| |||||||||||| ||||||||||||| |||| ||||||||||| | ||||| |||| |||| |||||| ||||| |
|
|
| T |
21628371 |
atttaaaacatcgtcgctaaaacgacccttcagttcatcaatgttatcagcaatctttttgtgtag-ttcctctggaataagtccaatgttttctatgta |
21628273 |
T |
|
| Q |
243 |
ttttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
||||| |||||||| |||||||||||| |
|
|
| T |
21628272 |
ttttgatgcccacacaagcttgtactt |
21628246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 269
Target Start/End: Complemental strand, 21792356 - 21792132
Alignment:
| Q |
45 |
tttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaat |
144 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||| ||||| ||||| || ||||||||||| || ||| ||||||| || ||||| || | ||| || |
|
|
| T |
21792356 |
tttctccaagatatgcaacaaagaacatccatccacgaacaatatccatgacagcttttcttcgaggctaccaaagccgtcaagagacttgcgggttaaa |
21792257 |
T |
|
| Q |
145 |
gttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgtatt |
244 |
Q |
| |
|
||||||||||| || |||| || ||||||| ||||||||||||| |||| |||||||| ||||| || |||||||| |||| ||||||||||||| |
|
|
| T |
21792256 |
gttaaaacatcatcgctaaaacgatccttcagcgtatcaatgttatcggcaatctttttgtgcagatctttcagaatgctttcagtttttttgatgtatt |
21792157 |
T |
|
| Q |
245 |
ttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
21792156 |
ctgctgcccacataagcttgtactt |
21792132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 269
Target Start/End: Complemental strand, 21764409 - 21764183
Alignment:
| Q |
43 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
142 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||| ||||||||| ||||| |||| || | |
|
|
| T |
21764409 |
cctttctccaagagataaagcaaagagcatccatccacgaacaacatccacgacaacttttcttcaaggctatgaaagccttcaagagactttccagtta |
21764310 |
T |
|
| Q |
143 |
atgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgt |
241 |
Q |
| |
|
| ||||||||||| || |||| |||||||||||| ||| ||||||||| |||| |||| |||||| | ||||| || | | | ||||||| |||| |
|
|
| T |
21764309 |
aagttaaaacatcatcgctaaaacgacccttcagttcatcgatgttatcagcaatcttttggtgtag-ttcctctggattaagtgcggtgttttctatgt |
21764211 |
T |
|
| Q |
242 |
attttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
||| |||||||||| ||||||||||||| |
|
|
| T |
21764210 |
attctgctgcccacttaagcttgtactt |
21764183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 21992549 - 21992303
Alignment:
| Q |
23 |
gccctggttcaacaagcctgcctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagcc |
122 |
Q |
| |
|
|||| |||||| ||||| || ||||||| |||||||| | |||||| ||||||||||| ||||||||||| || ||||||||||| || || ||||||| |
|
|
| T |
21992549 |
gcccaggttcatcaagcttggctttctctaagatatacaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggcttccaaagcc |
21992450 |
T |
|
| Q |
123 |
ttcgagagaatttctggtcaatgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatg |
222 |
Q |
| |
|
||| ||||| |||| | || ||||||||||| ||| ||||||||||||||||| |||||||||||| | ||| |||||||||||||| | || | |
|
|
| T |
21992449 |
ttcaagagactttccagctaaagttaaaacatcgtcactaaaatgacccttcagttcatcaatgttatcgataatctttttgtgtagatcgcatggatta |
21992350 |
T |
|
| Q |
223 |
cttccagtgtttttgatgtattttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
||| | |||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
21992349 |
agtcctgcattttcgatgtattttgctgcccacgtaagcttgtactt |
21992303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 21785773 - 21785527
Alignment:
| Q |
23 |
gccctggttcaacaagcctgcctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagcc |
122 |
Q |
| |
|
|||||||| || |||| || ||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| ||||| | |
|
|
| T |
21785773 |
gccctggtacatgaagcttggctttctccaagatatgtagcaaagaacatccatccacaaacaacatccacgacagcttttcttcaaggctaccaaagtc |
21785674 |
T |
|
| Q |
123 |
ttcgagagaatttctggtcaatgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatg |
222 |
Q |
| |
|
||| ||||| | | ||| || ||||||||||| || ||||||||||||||||| || ||||||||| |||| |||||||||||||| | || || |
|
|
| T |
21785673 |
ttcaagagactggccggttaaagttaaaacatcatcgctaaaatgacccttcagttcattaatgttatcggcaatctttttgtgtagatcgcgtggattg |
21785574 |
T |
|
| Q |
223 |
cttccagtgtttttgatgtattttgctgcccacataagcttgtactt |
269 |
Q |
| |
|
| || | || | || ||||||||| |||||||||||||||||||| |
|
|
| T |
21785573 |
cggcctatattctcgaggtattttgcggcccacataagcttgtactt |
21785527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 269
Target Start/End: Complemental strand, 21704984 - 21704764
Alignment:
| Q |
49 |
tccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatgtta |
148 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||| |||||||| |||||||| ||||| | |||||||||| ||||| |||| ||| | |||| |
|
|
| T |
21704984 |
tccaagatatggagcaaagaacatccatccatgaacaatatccacgacagcttttcatcaaggcactcaaagccttgaagagagtttccggttagagtta |
21704885 |
T |
|
| Q |
149 |
aaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgtattttg |
247 |
Q |
| |
|
||||||| || |||| |||||||||||| |||||||||||| |||| ||||||||||| | ||||| |||| ||| ||||||| |||||||||| |
|
|
| T |
21704884 |
aaacatcatcgctaaaacgacccttcagttcatcaatgttatctgcaatctttttgtgtag-ttcctctggaataagtccggtgttttctatgtattttg |
21704786 |
T |
|
| Q |
248 |
ctgcccacataagcttgtactt |
269 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21704785 |
ctgcccacataagcttgtactt |
21704764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 21745873 - 21745710
Alignment:
| Q |
49 |
tccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatgtta |
148 |
Q |
| |
|
|||||||||| |||||||| |||||||| || || ||||||||||| |||||||||||||| | |||||||||| |||||||||| || || |||| |
|
|
| T |
21745873 |
tccaagatatggagcaaagaacatccatctacgaataacatccacgacagcttttcttcaaggcattcaaagccttgaagagaatttccagttaaagtta |
21745774 |
T |
|
| Q |
149 |
aaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatc |
212 |
Q |
| |
|
||||||| || |||| |||||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
21745773 |
aaacatcgtcgctaaaacgacccttcagttcatcaatgttatcaacaatctttttgtgcagatc |
21745710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 268
Target Start/End: Complemental strand, 21652415 - 21652191
Alignment:
| Q |
44 |
ctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaa |
143 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||| |||||||||||||| | |||||||||||| |||||||||||||| ||||| || | || || |
|
|
| T |
21652415 |
ctttctccaagatatgcagcaacgaacatccatccacgaacaacatccacgacaacttttcttcaaggctatcaaagccttcaagagacttgccagttaa |
21652316 |
T |
|
| Q |
144 |
tgttaaaacatcttcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgta |
242 |
Q |
| |
|
||||||||||| || |||||||||||| |||| | ||| ||||| |||| ||||||||| ||| ||||| |||| || |||||| ||||| |
|
|
| T |
21652315 |
agttaaaacatcgtcgctaaaatgaccctttagttcgttaattttatcggcaatctttttgtgtcgat-cctctagaataaagccgttgttttctatgta |
21652217 |
T |
|
| Q |
243 |
ttttgctgcccacataagcttgtact |
268 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
21652216 |
ttttgctgcccacataagcttatact |
21652191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 25717 - 25588
Alignment:
| Q |
46 |
ttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatg |
145 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||| |||| |||||||||||||| || |||||||||| ||||| ||| | || || | |
|
|
| T |
25717 |
ttctccaagatatgtagcaaagaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttttagttaaag |
25618 |
T |
|
| Q |
146 |
ttaaaacatcttcatcaaaatgacccttca |
175 |
Q |
| |
|
|||||||||| || |||||||||||||| |
|
|
| T |
25617 |
ttaaaacatcctcgctaaaatgacccttca |
25588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 18192060 - 18192122
Alignment:
| Q |
63 |
caaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttc |
125 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
18192060 |
caaagaacatccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttc |
18192122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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