View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8531_high_13 (Length: 238)
Name: NF8531_high_13
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8531_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46904992 - 46904770
Alignment:
| Q |
1 |
cgtcatgatccaacatgtatcaaagcnnnnnnncttgacaaaagttgactaaatctttgtatcgaagtctttctaaaatgatggtcaaatgatgtgtccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46904992 |
cgtcatgatccaacatgtatcaaagcaaaaaaacttgacaaaagttgactagatctttgtatcgaagtcttcttaaaatgatggtcaaatgatgtgtccc |
46904893 |
T |
|
| Q |
101 |
attaatattgttgagtagtaatggcggtgcaaatgtatatggatgaaagcacttttacatgaggtagaacatatttagaatatggatgaatggactgata |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46904892 |
attaatattgttgagtagtaacggcggtgcaaatgtatgtggatgaaagcacttttacatgaggtaaaacatatttagaatatggatgaatggactgata |
46904793 |
T |
|
| Q |
201 |
cataaaaggaactttgttaatat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46904792 |
cataaaaggaactttgttaatat |
46904770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University