View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8531_high_4 (Length: 442)
Name: NF8531_high_4
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8531_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 39032903 - 39032477
Alignment:
| Q |
1 |
accgttagatctaaattggtggacatcatgggtggttggataaaaaagaaagagttgattaattgtagttgcaatnnnnnnnnctagcaacaaggtcgtc |
100 |
Q |
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| T |
39032903 |
accgttagatctaaattggtggacatcatgggtggttggataaaaaagaaagagtcgatt----gtagttgcaataaaaaaa-ctagcaacaaggtcgtc |
39032809 |
T |
|
| Q |
101 |
atctttttgctagaaaatatgtcgagagaagtagcattatccttaaaattaacaagattgttaacttcattcaagaacaagccatacgctaatccataat |
200 |
Q |
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| T |
39032808 |
atctttttgctagaaa-tatgtcgcgagaagtagcattatccttaaaattaacaagattgttaacttcattcaagaacaagccatacgctaatccataat |
39032710 |
T |
|
| Q |
201 |
aacagtttttacctcattgattttcttttgatcttaacctcaacatcataaatattcacctcgtctttatcgatccgcatgtattcatcaaagccatgac |
300 |
Q |
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| T |
39032709 |
aacacttttaacctcatcggttttcttttgatcttaacctcaacatcataaatattcatttggtctttatcgatccgcttgtattcatcaaagccatgac |
39032610 |
T |
|
| Q |
301 |
caacgattttgcaatgactacacaaattcaggcaaattttcatatctaaat------------nnnnnnnccaaaatctttcctttcaataattttttca |
388 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39032609 |
caacgattttgcaatgactacaaaaattcaggcaaatattcatatctaaataaaaaaataaaaaaaaaaagcaaaatctttcctttcaataattttttca |
39032510 |
T |
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| Q |
389 |
gcccccatttcctagatttctggaacatgcacc |
421 |
Q |
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| T |
39032509 |
gcccccatttcctagatttctggaacatgcacc |
39032477 |
T |
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