View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8531_high_6 (Length: 364)

Name: NF8531_high_6
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8531_high_6
NF8531_high_6
[»] chr5 (3 HSPs)
chr5 (149-364)||(28532814-28533029)
chr5 (33-151)||(28533069-28533187)
chr5 (318-363)||(41900503-41900548)
[»] chr3 (3 HSPs)
chr3 (33-143)||(51763081-51763191)
chr3 (307-364)||(51763388-51763445)
chr3 (307-364)||(51113195-51113252)
[»] chr6 (12 HSPs)
chr6 (75-149)||(6587982-6588056)
chr6 (307-364)||(6593929-6593986)
chr6 (307-363)||(6423907-6423963)
chr6 (180-251)||(6588144-6588215)
chr6 (308-361)||(6410699-6410752)
chr6 (19-65)||(14810035-14810081)
chr6 (307-361)||(19633104-19633158)
chr6 (315-364)||(6596241-6596290)
chr6 (306-347)||(7132323-7132364)
chr6 (306-347)||(7135246-7135287)
chr6 (306-347)||(7138169-7138210)
chr6 (308-364)||(6417093-6417149)
[»] chr4 (5 HSPs)
chr4 (306-364)||(553760-553818)
chr4 (19-66)||(1537252-1537299)
chr4 (15-112)||(53759964-53760058)
chr4 (310-364)||(21833278-21833332)
chr4 (19-71)||(1547374-1547426)
[»] chr7 (6 HSPs)
chr7 (306-364)||(10615714-10615772)
chr7 (19-68)||(15091285-15091334)
chr7 (306-364)||(10169047-10169105)
chr7 (306-364)||(10176572-10176630)
chr7 (15-59)||(10167233-10167277)
chr7 (19-51)||(10616213-10616245)
[»] chr8 (2 HSPs)
chr8 (320-364)||(32151969-32152013)
chr8 (308-356)||(34935986-34936034)
[»] chr1 (2 HSPs)
chr1 (301-364)||(7555199-7555262)
chr1 (306-363)||(19467428-19467485)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 149 - 364
Target Start/End: Complemental strand, 28533029 - 28532814
Alignment:
Q  149 cctacgtagcctcttcaaaaggttcacccatctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgt 248  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||   |    
T  28533029 cctacttagcctcttcaaaaggttcacccatctcaatttcctcgatctctctcgctatctaggtaacaacctcgacgaccttctctgccaaatctcagat 28532930  T
Q  249 ttctcgtcgttcaaattcacttcacccaaactcccaaacgttggtaaccgcttcccagcaaatggattgcgagctttttcacaaaacattacaactttga 348  Q
    ||| |||| |||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532929 ttcccgtcattcaaaatcatttcactcaaacttccaaacgttggtaaccgcttcccagcaaatggattgcgagctttttcacaaaacattacaactttga 28532830  T
Q  349 cctctttcacttgttc 364  Q
    ||||||||||||||||    
T  28532829 cctctttcacttgttc 28532814  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 28533187 - 28533069
Alignment:
Q  33 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 132  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28533187 tgttgggaatgtatcttcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcc 28533088  T
Q  133 tctccatcaccggccgcct 151  Q
    ||||||||||||| |||||    
T  28533087 tctccatcaccggacgcct 28533069  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 41900503 - 41900548
Alignment:
Q  318 cgagctttttcacaaaacattacaactttgacctctttcacttgtt 363  Q
    |||||||||||  |||| |||||||||||||||||| |||||||||    
T  41900503 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 51763081 - 51763191
Alignment:
Q  33 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 132  Q
    |||||||||| ||| |||| ||||||||||||| | | |   |||||| | ||||||||||||| ||||| ||||||||||| ||| ||||||| |||||    
T  51763081 tgttgggaatctatcttcaaattcatcatcaacaatgatgatgacgaagaaaacaaccgtcgcaacttgaattctctctccatcgtttccaaacagttcc 51763180  T
Q  133 tctccatcacc 143  Q
    |||||||||||    
T  51763181 tctccatcacc 51763191  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 51763388 - 51763445
Alignment:
Q  307 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||| ||||||||||    
T  51763388 caaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttc 51763445  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 51113195 - 51113252
Alignment:
Q  307 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    ||||||||||||||||||| ||  |||| ||||||||| |||||||| ||||||||||    
T  51113195 caaatggattgcgagctttctcggaaaatattacaactctgacctctctcacttgttc 51113252  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 6587982 - 6588056
Alignment:
Q  75 gacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcctctccatcaccggccgc 149  Q
    ||||||||||||||||||| |||| ||| |||||||||| |||||||||| | ||||||| ||||||||| ||||    
T  6587982 gacgaaaacaacaaccgtcacagcatgatttctctctccgccgtatccaagcagttcctcgccatcaccgaccgc 6588056  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 6593929 - 6593986
Alignment:
Q  307 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||||||||||| ||||||    
T  6593929 caaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttc 6593986  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 6423963 - 6423907
Alignment:
Q  307 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 363  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||| |||||||||    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 6588144 - 6588215
Alignment:
Q  180 ctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgtttc 251  Q
    |||| ||||||||||||||| || |||  |||| |  |||||||||||||||| ||||||||||||||||||    
T  6588144 ctcacttccctcaatctctcgcgatatagcggttatgacctcgacgaccttctttgccaaatctctcgtttc 6588215  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 6410752 - 6410699
Alignment:
Q  308 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 361  Q
    |||||| |||| || ||| || ||||||||||||||||||||||||||||||||    
T  6410752 aaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttg 6410699  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 14810081 - 14810035
Alignment:
Q  19 atttacctgatgagtgttgggaatgtatattcagattcatcatcaac 65  Q
    ||||||||||||||||||||||| || | || |||||||||||||||    
T  14810081 atttacctgatgagtgttgggaacgtgtctttagattcatcatcaac 14810035  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 19633158 - 19633104
Alignment:
Q  307 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 361  Q
    ||||||| ||||||||||| ||  ||| ||||||||||||||||||| |||||||    
T  19633158 caaatgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 364
Target Start/End: Original strand, 6596241 - 6596290
Alignment:
Q  315 ttgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    ||||||| ||| || |||||||| ||||||||||||||| ||||||||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttc 6596290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 7132364 - 7132323
Alignment:
Q  306 gcaaatggattgcgagctttttcacaaaacattacaactttg 347  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7132364 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 7135287 - 7135246
Alignment:
Q  306 gcaaatggattgcgagctttttcacaaaacattacaactttg 347  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7135287 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 7138210 - 7138169
Alignment:
Q  306 gcaaatggattgcgagctttttcacaaaacattacaactttg 347  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7138210 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 6417149 - 6417093
Alignment:
Q  308 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    |||||| || |||||||| || ||||| | |||||||||||||||| ||||||||||    
T  6417149 aaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttc 6417093  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 553818 - 553760
Alignment:
Q  306 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||| |||| |||||    
T  553818 gcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgttc 553760  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 1537252 - 1537299
Alignment:
Q  19 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacg 66  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  1537252 atttacctgatgagtgttgggaatgtgtattcagattcctcaacaacg 1537299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 53759964 - 53760058
Alignment:
Q  15 tcagatttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctc 112  Q
    |||||||||||||||||||| ||||||| ||| |||| | || |||||||| ||   | |||| ||||||||||||||| || ||||| |||||||||    
T  53759964 tcagatttacctgatgagtgctgggaatctatcttcaaactcgtcatcaacaac---aaggacaaaaacaacaaccgtcacaacttgaattctctctc 53760058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 21833278 - 21833332
Alignment:
Q  310 atggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    |||| ||||||| |||| ||||||||||||| |||||||||||| ||||||||||    
T  21833278 atgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttc 21833332  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 1547374 - 1547426
Alignment:
Q  19 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggt 71  Q
    |||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||    
T  1547374 atttacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggt 1547426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 10615772 - 10615714
Alignment:
Q  306 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    |||||||| || |||||||| || ||||| |||||||||||||||||| ||||||||||    
T  10615772 gcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttc 10615714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 15091285 - 15091334
Alignment:
Q  19 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgac 68  Q
    ||||||| |||||||||||||||||  | |||||||||||||||||||||    
T  15091285 atttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgac 15091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 10169047 - 10169105
Alignment:
Q  306 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||    
T  10169047 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttc 10169105  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 10176572 - 10176630
Alignment:
Q  306 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||    
T  10176572 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttc 10176630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 10167233 - 10167277
Alignment:
Q  15 tcagatttacctgatgagtgttgggaatgtatattcagattcatc 59  Q
    |||||||||||||| || ||||||||||  |||||||||||||||    
T  10167233 tcagatttacctgacgaatgttgggaattgatattcagattcatc 10167277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 10616245 - 10616213
Alignment:
Q  19 atttacctgatgagtgttgggaatgtatattca 51  Q
    |||||||||||||||||||||||||||| ||||    
T  10616245 atttacctgatgagtgttgggaatgtatcttca 10616213  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
Q  320 agctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    |||||| || |||||||||||||||||||||||| ||||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 34935986 - 34936034
Alignment:
Q  308 aaatggattgcgagctttttcacaaaacattacaactttgacctctttc 356  Q
    |||||| ||||||| ||| |||||||| |||||||||||||| ||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatctttc 34936034  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 7555262 - 7555199
Alignment:
Q  301 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 364  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  ||||||||||    
T  7555262 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttc 7555199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 19467428 - 19467485
Alignment:
Q  306 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 363  Q
    |||||||| ||||||| |||  | ||||| |||||||||||||||||| |||||||||    
T  19467428 gcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

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