View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8531_low_1 (Length: 525)

Name: NF8531_low_1
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8531_low_1
NF8531_low_1
[»] chr5 (4 HSPs)
chr5 (236-514)||(936852-937130)
chr5 (406-501)||(28710168-28710263)
chr5 (219-292)||(24186685-24186759)
chr5 (51-103)||(28710548-28710601)
[»] chr7 (6 HSPs)
chr7 (23-199)||(11916948-11917128)
chr7 (44-118)||(21505297-21505372)
chr7 (461-500)||(21508781-21508820)
chr7 (235-321)||(21508540-21508626)
chr7 (165-201)||(23221820-23221856)
chr7 (219-271)||(34424733-34424785)
[»] chr3 (6 HSPs)
chr3 (159-371)||(15047415-15047621)
chr3 (235-349)||(13929937-13930050)
chr3 (216-271)||(11201363-11201418)
chr3 (235-278)||(20101910-20101953)
chr3 (47-194)||(15047249-15047403)
chr3 (216-277)||(20906097-20906162)
[»] chr4 (5 HSPs)
chr4 (255-331)||(12383932-12384008)
chr4 (25-194)||(31595152-31595322)
chr4 (44-118)||(20717312-20717387)
chr4 (44-118)||(20717362-20717437)
chr4 (41-139)||(31589678-31589779)
[»] chr2 (3 HSPs)
chr2 (26-106)||(6880589-6880669)
chr2 (20-138)||(6880605-6880725)
chr2 (44-106)||(6875073-6875135)
[»] scaffold0364 (1 HSPs)
scaffold0364 (272-326)||(14666-14720)
[»] chr6 (1 HSPs)
chr6 (217-278)||(26278956-26279017)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 236 - 514
Target Start/End: Original strand, 936852 - 937130
Alignment:
Q  236 acccatatgaatatactatccttagattgaataaaactcccccatacctcaaagttttgcaaatagataaattcatacggttgaatctctctctaaattt 335  Q
    ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||| ||||||||||||| |||    
T  936852 acccatacgaatatactacccttagattgaataaaactcccccgtacctcaaagttttgcaaatcgatgaattcatacagttaaatctctctctaagttt 936951  T
Q  336 ctctctaggcctctattctccacaaccctaatttttcctcatgctatccttttctttttcttttataaaactaattctctaatactcttctttatttata 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  936952 ctctctaggcctctattctccacaaccctaatttttcctcatgctatccttttctctttcttttataaaactaattctctaatgctcttctttatttata 937051  T
Q  436 aagactatttgggcttatttttatcacttaatctttgacagacttactatctgcacctctaatttgcaccctacttcat 514  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  937052 aagactgtttgggcttatttttatcacttaatctttgacagacttactatctgcacctctaatttgcaccctacttcat 937130  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 406 - 501
Target Start/End: Complemental strand, 28710263 - 28710168
Alignment:
Q  406 ctaattctctaatactcttctttatttataaagactatttgggcttatttttatcacttaatctttgacagacttactatctgcacctctaatttg 501  Q
    |||||||| |||| ||||||| |||||||||  |||||||| | ||| |||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  28710263 ctaattctttaatgctcttctctatttataatcactatttgagtttagttttctcacttaatctttgacatacttactatctacacctctaatttg 28710168  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 24186685 - 24186759
Alignment:
Q  219 gttaatgacttctcgttacccatatgaatatactatccttagattgaataaaactcc-cccatacctcaaagttt 292  Q
    ||||| |||| |||| |||||| |||||||||||| || | |||||||||||||||| ||| |||||||| ||||    
T  24186685 gttaaggactcctcgctacccacatgaatatactacccatggattgaataaaactccacccttacctcaatgttt 24186759  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 28710601 - 28710548
Alignment:
Q  51 aaaagtaattataattacataaaa-aacattattttaacagagattcatcaaaa 103  Q
    ||||||||||||||  |||||||| ||||| ||||||||| |||||||||||||    
T  28710601 aaaagtaattataacaacataaaataacatgattttaacaaagattcatcaaaa 28710548  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 11917128 - 11916948
Alignment:
Q  23 aagaacattaatctaataaaaattcatcaaaagtaattataattacataaaa-aacattattttaacagagattcatcaaaaatatttataataaca--a 119  Q
    |||||||| ||| ||||||| ||||||| ||| |||||||||  |||||||| ||||| ||| ||||| | ||||||||||| || || ||| ||||  |    
T  11917128 aagaacataaatttaataaatattcatcgaaaataattataacaacataaaataacataattctaacaaacattcatcaaaagtaattgtaacaacataa 11917029  T
Q  120 aagaatatgattttaacaagaatcataaaaacaaattataaca---taaaagagcatgattttaacaaagattcatcataaga 199  Q
    ||||| ||||||||||  ||| |||| ||||  ||||||||||   ||||||| ||||| |||||||||||||||||||||||    
T  11917028 aagaacatgattttaa--agattcatcaaaagtaattataacaacataaaagaacatgaatttaacaaagattcatcataaga 11916948  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 21505297 - 21505372
Alignment:
Q  44 attcatcaaaagtaattataattacataaaa-aacattattttaacagagattcatcaaaaatatttataataaca 118  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||| | ||||||||||||| || |||||| ||||    
T  21505297 attcatcaaaagtaattataataacataaaataacatgattttaataaagattcatcaaaagtacttataacaaca 21505372  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 500
Target Start/End: Original strand, 21508781 - 21508820
Alignment:
Q  461 acttaatctttgacagacttactatctgcacctctaattt 500  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  21508781 acttaatctttgatagacttactatctgcacctctaattt 21508820  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 21508540 - 21508626
Alignment:
Q  235 tacccatatgaatatactatccttagattgaataaaactcccccatacctcaaagttttgcaaatagataaattcatacggttgaat 321  Q
    |||||| || ||||||| |  |||||||||||||||| |||||  |||||||||||| ||||| | | | ||||| |||||||||||    
T  21508540 tacccacataaatatacaactcttagattgaataaaattccccgttacctcaaagttctgcaacttggtgaattcctacggttgaat 21508626  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 23221856 - 23221820
Alignment:
Q  165 aaagagcatgattttaacaaagattcatcataagaat 201  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  23221856 aaagaacatgaatttaacaaagattcatcataagaat 23221820  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 34424733 - 34424785
Alignment:
Q  219 gttaatgacttctcgttacccatatgaatatactatccttagattgaataaaa 271  Q
    ||||| ||||||||| ||||||  ||||||||| | |||||||||||||||||    
T  34424733 gttaaggacttctcgctacccacgtgaatatacaacccttagattgaataaaa 34424785  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 371
Target Start/End: Original strand, 15047415 - 15047621
Alignment:
Q  159 aacataaaagagcatgattttaacaaagattcatcataagaatnnnnnnnnncgcctgaggttaatgacttctcgttacccatatgaatatactatcctt 258  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||         | || |||||||| |||| |||| |||||| |||||||||| | ||||    
T  15047415 aacataaaagaacatgattttaacaaggattcatcaaaagaatttaagaaaacaccggaggttaaagactcctcgatacccacatgaatatacaaccctt 15047514  T
Q  259 agattgaataaaactcccccatacctcaaagttttgcaaatagataaattcatacggttgaatctctctctaaatttctctctaggcctctattctccac 358  Q
    | |||||||||  ||||    ||||| |||||| ||||||| ||| ||||  ||||||||||| ||| |  ||  ||||||||| |||||| ||||||||    
T  15047515 aaattgaataaccctcc----taccttaaagttctgcaaattgatgaatttctacggttgaatgtctat--aagcttctctctatgcctcttttctccac 15047608  T
Q  359 aaccctaattttt 371  Q
    |||| || |||||    
T  15047609 aaccatatttttt 15047621  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 349
Target Start/End: Original strand, 13929937 - 13930050
Alignment:
Q  235 tacccatatgaatatactatccttagattgaataaaac-tcccccatacctcaaagttttgcaaatagataaattcatacggttgaatctctctctaaat 333  Q
    |||||| |||||||||| | |||||||||| ||||||| |||||| ||| ||||| || ||||||| ||||||||||||  ||||||||||| |||||      
T  13929937 tacccacatgaatatacaa-ccttagattg-ataaaacttcccccttacttcaaatttatgcaaattgataaattcatatagttgaatctctgtctaagc 13930034  T
Q  334 ttctctctaggcctct 349  Q
    || |||||| ||||||    
T  13930035 ttttctctatgcctct 13930050  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 11201418 - 11201363
Alignment:
Q  216 gaggttaatgacttctcgttacccatatgaatatactatccttagattgaataaaa 271  Q
    ||||||||||| |||||| ||||||||  ||||||||| ||||||| |||||||||    
T  11201418 gaggttaatgatttctcgctacccatagaaatatactacccttagactgaataaaa 11201363  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 20101953 - 20101910
Alignment:
Q  235 tacccatatgaatatactatccttagattgaataaaactccccc 278  Q
    |||||| ||||||||||||  |||||||||||||||||||||||    
T  20101953 tacccacatgaatatactacacttagattgaataaaactccccc 20101910  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 15047249 - 15047403
Alignment:
Q  47 catcaaaagtaattataattacataaaa-aacattattttaacagagattcatcaaaaatatttataataaca--aaagaatatgattttaacaag-aat 142  Q
    |||| ||||| |||||||  | |||||| ||||| |||||||||  ||||||| |||| || |||||| ||||  |||||| |||||||||||||| | |    
T  15047249 catctaaagttattataaccatataaaacaacatgattttaacaatgattcataaaaagtaattataacaacataaaagaacatgattttaacaagcatt 15047348  T
Q  143 cataaaaacaaattata---acataaaagagcatgattttaacaaagattcatca 194  Q
    ||| ||||  |||||||   |||||||||| ||  |||||||||| |||||||||    
T  15047349 catcaaaagtaattataacgacataaaagaacacaattttaacaaggattcatca 15047403  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 20906097 - 20906162
Alignment:
Q  216 gaggttaatgacttctcgttacccatatgaatata----ctatccttagattgaataaaactcccc 277  Q
    |||||||| |||| || || |||||||||||||||    ||| |||||||||||||||||||||||    
T  20906097 gaggttaaagactccttgtcacccatatgaatatatatactacccttagattgaataaaactcccc 20906162  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 12384008 - 12383932
Alignment:
Q  255 ccttagattgaataaaactcccccatacctcaaagttttgcaaatagataaattcatacggttgaatctctctctaa 331  Q
    ||||| |||||||||||| ||||| |||||||| ||||||||||| ||| ||||| || ||||||||||| ||||||    
T  12384008 ccttatattgaataaaacacccccttacctcaatgttttgcaaattgatgaattcctatggttgaatctccctctaa 12383932  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 31595152 - 31595322
Alignment:
Q  25 gaacattaatctaataaaaattcatcaaaagtaattataattacataaaa-aacattattttaacagagattcatcaaaaa-tatttataataaca--aa 120  Q
    |||||| ||| ||| |||||||||||||||||||||||||   ||||||| ||||| ||||||||| | |||||||||||| || |||||| ||||  ||    
T  31595152 gaacataaatttaacaaaaattcatcaaaagtaattataacagcataaaataacatgattttaacaaaaattcatcaaaaaatagttataacaacataaa 31595251  T
Q  121 agaatatgattttaacaa-gaatcataaaaacaaattataacataaaagagcatgattttaacaaagattcatca 194  Q
    |||| ||| ||||||||| ||||| | ||||  |||||||| | |||    ||| ||||||||||| ||||||||    
T  31595252 agaacatgtttttaacaaagaatcgtcaaaagtaattataataaaaa----cataattttaacaaaaattcatca 31595322  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 20717387 - 20717312
Alignment:
Q  44 attcatcaaaagtaattataattacataaaa-aacattattttaacagagattcatcaaaaatatttataataaca 118  Q
    |||||||||||||||||||||  |||||||| ||||| ||||||| |  |||||||||||| || |||||| ||||    
T  20717387 attcatcaaaagtaattataacaacataaaataacatgattttaagaaggattcatcaaaagtaattataacaaca 20717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 20717437 - 20717362
Alignment:
Q  44 attcatcaaaagtaattataattacataaaa-aacattattttaacagagattcatcaaaaatatttataataaca 118  Q
    |||||||||||||||||||||  |||||||| ||||| ||||||| |  |||||||||||| || |||||| ||||    
T  20717437 attcatcaaaagtaattataacaacataaaataacatgattttaaaaaggattcatcaaaagtaattataacaaca 20717362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 31589678 - 31589779
Alignment:
Q  41 aaaattcatcaaaagtaattataattacataaa-aaacattattttaacagagattcatcaaaaatatttataataaca--aaagaatatgattttaaca 137  Q
    ||||||||||||||||| ||| ||  ||| ||| |||||| | |||||||  |||||||||||| || |||||| ||||  |||||| ||||||||||||    
T  31589678 aaaattcatcaaaagtatttacaacaacacaaagaaacatgaatttaacaaggattcatcaaaagtaattataacaacataaaagaacatgattttaaca 31589777  T
Q  138 ag 139  Q
    ||    
T  31589778 ag 31589779  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 6880669 - 6880589
Alignment:
Q  26 aacattaatctaataaaaattcatcaaaagtaattataattacataaaaaacattattttaacagagattcatcaaaaata 106  Q
    ||||| ||| ||| ||| |||||||||||||||||||||  ||||||| ||||| |||||||||  |||||||||||||||    
T  6880669 aacatgaatttaacaaagattcatcaaaagtaattataacaacataaataacatgattttaacaatgattcatcaaaaata 6880589  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 6880725 - 6880605
Alignment:
Q  20 tataagaacattaatctaataaaaattcatcaaaagtaattataattacataaa-aaacattattttaacagagattcatcaaaaatatttataataaca 118  Q
    ||||||||||| ||| ||| ||| |||||||||||||||||| ||  | | ||| |||||| | ||||||| ||||||||||||| || |||||| ||||    
T  6880725 tataagaacatgaatttaacaaagattcatcaaaagtaattacaacaatacaaataaacatgaatttaacaaagattcatcaaaagtaattataacaaca 6880626  T
Q  119 -aaagaatatgattttaacaa 138  Q
     ||| || |||||||||||||    
T  6880625 taaataacatgattttaacaa 6880605  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 6875135 - 6875073
Alignment:
Q  44 attcatcaaaagtaattataattacataaaaaacattattttaacagagattcatcaaaaata 106  Q
    |||||||||||||||||||||  ||||||| ||||| ||||||||   |||||||||||||||    
T  6875135 attcatcaaaagtaattataacaacataaataacatgattttaactaggattcatcaaaaata 6875073  T

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Target: scaffold0364 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 14666 - 14720
Alignment:
Q  272 ctcccccatacctcaaagttttgcaaatagataaattcatacggttgaatctctc 326  Q
    ||||||| |||||| | ||||||||||| ||| ||||| ||||||||||||||||    
T  14666 ctcccccttacctcgatgttttgcaaattgatgaattcctacggttgaatctctc 14720  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 26278956 - 26279017
Alignment:
Q  217 aggttaatgacttctcgttacccatatgaatatactatccttagattgaataaaactccccc 278  Q
    ||||||||||||  ||  |||||| |||||||||  | ||||||||||||||||||||||||    
T  26278956 aggttaatgactcttctctacccacatgaatatatcacccttagattgaataaaactccccc 26279017  T

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