View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8531_low_10 (Length: 313)
Name: NF8531_low_10
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8531_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 47893822 - 47894134
Alignment:
| Q |
1 |
cccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccggagagaccctcaaaaatacaattattccggcaatccttgccctgagtt |
100 |
Q |
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| T |
47893822 |
cccatgactggacggactgtccatactctcatcccggtgaaaaagctcgccggagagaccctcaaaaatacaattattccggcaatccttgcccggagtt |
47893921 |
T |
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| Q |
101 |
tcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagctttgt |
200 |
Q |
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| T |
47893922 |
tcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagctttgt |
47894021 |
T |
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| Q |
201 |
aacgacggaaccctttgccggagacgagtttgtttctttgctcataccattgatcaactccgtgtctcagataacgcttcaccgtaatcaattgtgtcgt |
300 |
Q |
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| T |
47894022 |
aacgacggaaccctttgccggagacgagtttgtttctttgctcataccattgatcaactccgtgtctcaaataacgcttcaccggaatcatttgtttcat |
47894121 |
T |
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| Q |
301 |
ctcctacttcagt |
313 |
Q |
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| T |
47894122 |
ctcctacctcagt |
47894134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 42926381 - 42926175
Alignment:
| Q |
3 |
catgactggacggactgtccatactctcatcccggcgaaaaagctcgccggagagaccctcaaaaatacaattattccggcaatccttgccctgagtttc |
102 |
Q |
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| T |
42926381 |
catgactggacggagtgtcctttttctcatcccggcgagaaagctcgccgccgtgacccgagaaagtataactactccggcacttcatgtcctgattttc |
42926282 |
T |
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| Q |
103 |
gcaaattaggaaactgcaccaaaggtgattcttgccacttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagctttgtaa |
202 |
Q |
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| T |
42926281 |
gtaaa---ggaagttgcaagaaaggtgattcgtgtgagtttgctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaa |
42926185 |
T |
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| Q |
203 |
cgacggaacc |
212 |
Q |
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| T |
42926184 |
agacggaacc |
42926175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 38748222 - 38748172
Alignment:
| Q |
141 |
ttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaact |
191 |
Q |
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| T |
38748222 |
ttcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaact |
38748172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 34340212 - 34340261
Alignment:
| Q |
3 |
catgactggacggactgtccatactctcatcccggcgaaaaagctcgccg |
52 |
Q |
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| T |
34340212 |
catgactggacggagtgtccatacgcacatcccggcgagaaagcacgccg |
34340261 |
T |
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