View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8531_low_11 (Length: 273)

Name: NF8531_low_11
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8531_low_11
NF8531_low_11
[»] chr5 (2 HSPs)
chr5 (13-255)||(36464562-36464804)
chr5 (13-255)||(36473928-36474170)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 36464562 - 36464804
Alignment:
Q  13 atactcaatggtttgctttgcctcatttcttgagcattatgacgtgtgttcgaagcatgacgtgacaatgagacaattgcttttttaggggtgcaatttg 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  36464562 atactcaatggttttctttgcctcatttcttgagcattatgacgtgtattcgaagcacgacgtgacaatgagacaattgcttttttatgggtgcaatttg 36464661  T
Q  113 atatgttagatttgttaatggaaagttgtatcgtttgatcatacttgatgaaacattttcaatcattgatgaacggttccatccaatttgaatacttgct 212  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36464662 atatgttagatttgttaatggaaagttgtatcgtttgatcgtacttgatgaaacatttccaatcattgatgaacggttccatccaatttgaatacttgct 36464761  T
Q  213 actttctcccccaccaccaccacaacttgatttaagtcatgaa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36464762 actttctcccccaccaccaccacaacttgatttaagtcatgaa 36464804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 36473928 - 36474170
Alignment:
Q  13 atactcaatggtttgctttgcctcatttcttgagcattatgacgtgtgttcgaagcatgacgtgacaatgagacaattgcttttttaggggtgcaatttg 112  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  36473928 atactcaatggtttgttttgcttcatttcttgagcattatgacatgtattcgtagcacgacgtgacaatgagacaattgcttttttaggggtgcaatttg 36474027  T
Q  113 atatgttagatttgttaatggaaagttgtatcgtttgatcatacttgatgaaacattttcaatcattgatgaacggttccatccaatttgaatacttgct 212  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36474028 atatgttagatttgttaatggaaagttgtatcgtttgatcgtacgtgatgaaacattttcaatcattgatgaacggttccatccaatttgaatacttgct 36474127  T
Q  213 actttctcccccaccaccaccacaacttgatttaagtcatgaa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36474128 actttctcccccaccaccaccacaacttgatttaagtcatgaa 36474170  T

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