View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8531_low_16 (Length: 239)

Name: NF8531_low_16
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8531_low_16
NF8531_low_16
[»] chr8 (20 HSPs)
chr8 (1-224)||(29025526-29025749)
chr8 (143-224)||(40228727-40228808)
chr8 (143-224)||(43448869-43448950)
chr8 (142-224)||(39463410-39463492)
chr8 (149-224)||(4989631-4989706)
chr8 (165-224)||(43084568-43084627)
chr8 (142-224)||(9880419-9880501)
chr8 (142-224)||(34168130-34168212)
chr8 (151-224)||(4760486-4760559)
chr8 (171-224)||(18673046-18673099)
chr8 (171-224)||(39698613-39698666)
chr8 (184-221)||(44713690-44713727)
chr8 (149-224)||(8471411-8471486)
chr8 (149-224)||(31899173-31899248)
chr8 (149-224)||(34461507-34461582)
chr8 (151-216)||(7839619-7839681)
chr8 (171-224)||(13109141-13109194)
chr8 (151-224)||(14541673-14541746)
chr8 (171-224)||(17921110-17921163)
chr8 (184-224)||(27416655-27416695)
[»] chr4 (41 HSPs)
chr4 (142-224)||(37654563-37654645)
chr4 (143-224)||(40010795-40010876)
chr4 (142-224)||(50623237-50623319)
chr4 (143-224)||(2493255-2493336)
chr4 (143-224)||(45889714-45889795)
chr4 (151-224)||(53814428-53814501)
chr4 (139-224)||(45043507-45043592)
chr4 (151-224)||(49089616-49089689)
chr4 (165-224)||(29370756-29370815)
chr4 (142-224)||(18430142-18430224)
chr4 (142-224)||(24941033-24941115)
chr4 (142-224)||(52957712-52957794)
chr4 (139-224)||(17499633-17499718)
chr4 (151-224)||(29519456-29519529)
chr4 (149-224)||(27653827-27653902)
chr4 (142-224)||(39984970-39985052)
chr4 (142-224)||(49080399-49080481)
chr4 (143-224)||(2728321-2728402)
chr4 (151-224)||(24259762-24259835)
chr4 (143-224)||(28116396-28116477)
chr4 (151-224)||(44571796-44571869)
chr4 (136-224)||(54233967-54234055)
chr4 (184-224)||(55126648-55126688)
chr4 (142-224)||(1819715-1819797)
chr4 (142-224)||(42605725-42605807)
chr4 (142-224)||(47321296-47321378)
chr4 (142-215)||(34316382-34316455)
chr4 (143-224)||(56373498-56373579)
chr4 (180-224)||(52254001-52254045)
chr4 (143-226)||(6462163-6462246)
chr4 (143-198)||(32140798-32140853)
chr4 (151-198)||(54092124-54092171)
chr4 (142-224)||(34124446-34124528)
chr4 (142-224)||(40345269-40345351)
chr4 (142-224)||(51434176-51434258)
chr4 (142-224)||(52847976-52848058)
chr4 (171-224)||(20448192-20448245)
chr4 (184-224)||(4408138-4408178)
chr4 (184-224)||(19282371-19282411)
chr4 (184-224)||(19878801-19878841)
chr4 (184-224)||(34534054-34534094)
[»] chr7 (30 HSPs)
chr7 (139-224)||(10599516-10599601)
chr7 (142-224)||(1742144-1742226)
chr7 (134-224)||(35777972-35778062)
chr7 (151-224)||(13405052-13405125)
chr7 (151-224)||(16564728-16564801)
chr7 (151-224)||(16600861-16600934)
chr7 (151-224)||(48684876-48684949)
chr7 (142-224)||(37815877-37815959)
chr7 (142-223)||(6521973-6522054)
chr7 (143-224)||(7795160-7795241)
chr7 (143-224)||(10684748-10684829)
chr7 (143-224)||(27947418-27947499)
chr7 (151-224)||(29530860-29530933)
chr7 (151-224)||(31418438-31418511)
chr7 (151-224)||(45948555-45948628)
chr7 (153-224)||(24680281-24680352)
chr7 (139-224)||(19276531-19276616)
chr7 (151-224)||(44453286-44453359)
chr7 (142-224)||(19906567-19906649)
chr7 (142-224)||(32345752-32345834)
chr7 (151-224)||(23155387-23155460)
chr7 (143-224)||(26963634-26963715)
chr7 (171-224)||(36447016-36447069)
chr7 (171-224)||(36808087-36808140)
chr7 (151-224)||(41137881-41137954)
chr7 (151-224)||(42879859-42879932)
chr7 (184-224)||(23935574-23935614)
chr7 (184-224)||(31416710-31416750)
chr7 (136-224)||(39117400-39117488)
chr7 (142-198)||(40299017-40299073)
[»] chr5 (24 HSPs)
chr5 (143-224)||(42329463-42329544)
chr5 (149-224)||(39566336-39566411)
chr5 (132-224)||(42103971-42104063)
chr5 (149-224)||(3305934-3306009)
chr5 (151-224)||(6519130-6519203)
chr5 (151-224)||(39730099-39730172)
chr5 (153-224)||(42978002-42978073)
chr5 (142-224)||(26660907-26660989)
chr5 (142-224)||(26932500-26932582)
chr5 (151-224)||(8336334-8336407)
chr5 (149-224)||(42661865-42661940)
chr5 (142-224)||(33822419-33822501)
chr5 (143-224)||(2729705-2729786)
chr5 (149-224)||(14006045-14006120)
chr5 (151-218)||(34445955-34446022)
chr5 (154-224)||(14620424-14620494)
chr5 (151-224)||(793531-793604)
chr5 (151-224)||(29653439-29653512)
chr5 (151-224)||(39504878-39504951)
chr5 (149-201)||(34919911-34919963)
chr5 (151-198)||(4742193-4742240)
chr5 (151-224)||(4833563-4833636)
chr5 (151-224)||(27652246-27652319)
chr5 (180-216)||(27600555-27600591)
[»] chr1 (33 HSPs)
chr1 (143-224)||(10842933-10843014)
chr1 (148-224)||(9333232-9333308)
chr1 (148-224)||(9357005-9357081)
chr1 (132-224)||(31491676-31491768)
chr1 (142-224)||(254829-254911)
chr1 (142-224)||(9915597-9915679)
chr1 (142-224)||(48009163-48009245)
chr1 (136-224)||(1740550-1740638)
chr1 (139-224)||(32806851-32806936)
chr1 (151-224)||(40717287-40717360)
chr1 (149-216)||(11134385-11134452)
chr1 (169-224)||(43759485-43759540)
chr1 (149-220)||(46286741-46286812)
chr1 (149-224)||(49468634-49468709)
chr1 (151-224)||(15823187-15823260)
chr1 (151-224)||(43358139-43358212)
chr1 (136-224)||(26252272-26252360)
chr1 (152-224)||(35847862-35847934)
chr1 (142-224)||(7213950-7214037)
chr1 (143-224)||(5463728-5463809)
chr1 (151-224)||(22665089-22665162)
chr1 (143-212)||(34110692-34110761)
chr1 (151-224)||(44582705-44582778)
chr1 (143-224)||(49426336-49426417)
chr1 (184-224)||(9552315-9552355)
chr1 (149-224)||(672207-672282)
chr1 (149-224)||(42650174-42650249)
chr1 (142-224)||(2459158-2459240)
chr1 (149-198)||(12002424-12002473)
chr1 (151-224)||(38530764-38530837)
chr1 (171-224)||(44108754-44108807)
chr1 (151-224)||(49894934-49895007)
chr1 (149-201)||(28751333-28751385)
[»] chr3 (34 HSPs)
chr3 (151-224)||(38016527-38016600)
chr3 (151-224)||(3152731-3152804)
chr3 (139-224)||(44676374-44676459)
chr3 (151-224)||(45213646-45213719)
chr3 (149-224)||(33193953-33194028)
chr3 (142-224)||(41287411-41287493)
chr3 (142-224)||(47895259-47895341)
chr3 (151-224)||(36541646-36541719)
chr3 (151-211)||(51482102-51482162)
chr3 (149-224)||(32303828-32303903)
chr3 (149-224)||(39359073-39359148)
chr3 (149-216)||(43169497-43169564)
chr3 (142-224)||(2458161-2458243)
chr3 (142-224)||(23525231-23525313)
chr3 (142-224)||(53200596-53200678)
chr3 (139-217)||(53560826-53560904)
chr3 (143-224)||(41850534-41850615)
chr3 (143-224)||(44645494-44645575)
chr3 (139-224)||(49470927-49471012)
chr3 (151-224)||(54933130-54933203)
chr3 (136-224)||(2988520-2988608)
chr3 (136-224)||(43687793-43687881)
chr3 (149-220)||(51381883-51381954)
chr3 (134-224)||(25722369-25722459)
chr3 (142-224)||(51398163-51398245)
chr3 (142-224)||(54261570-54261652)
chr3 (139-224)||(38363944-38364029)
chr3 (143-224)||(47138118-47138199)
chr3 (184-224)||(30431273-30431313)
chr3 (142-224)||(20512412-20512494)
chr3 (142-224)||(35557668-35557750)
chr3 (171-224)||(30426267-30426320)
chr3 (142-198)||(31290892-31290948)
chr3 (142-198)||(44648328-44648384)
[»] chr2 (26 HSPs)
chr2 (142-224)||(441149-441231)
chr2 (142-224)||(4133175-4133257)
chr2 (149-224)||(29396605-29396680)
chr2 (150-224)||(38926759-38926833)
chr2 (143-224)||(42753900-42753981)
chr2 (149-224)||(29808966-29809041)
chr2 (149-224)||(38809851-38809926)
chr2 (142-224)||(12342246-12342328)
chr2 (142-224)||(32227929-32228011)
chr2 (151-224)||(39866597-39866671)
chr2 (151-224)||(8774205-8774278)
chr2 (151-224)||(8789357-8789430)
chr2 (184-224)||(42743181-42743221)
chr2 (182-224)||(6220362-6220404)
chr2 (151-217)||(13562153-13562219)
chr2 (142-224)||(16807435-16807517)
chr2 (142-224)||(16846716-16846798)
chr2 (149-224)||(14698142-14698217)
chr2 (151-206)||(18374377-18374432)
chr2 (142-213)||(36106321-36106392)
chr2 (142-224)||(25332724-25332806)
chr2 (142-224)||(30855258-30855340)
chr2 (142-224)||(43388575-43388657)
chr2 (151-224)||(25383412-25383485)
chr2 (136-224)||(775796-775884)
chr2 (180-224)||(12393875-12393919)
[»] chr6 (6 HSPs)
chr6 (151-224)||(10520317-10520390)
chr6 (139-224)||(1135078-1135163)
chr6 (151-224)||(19675131-19675204)
chr6 (151-224)||(25932783-25932856)
chr6 (154-223)||(26189664-26189733)
chr6 (155-224)||(24163644-24163714)
[»] scaffold0078 (1 HSPs)
scaffold0078 (151-224)||(1375-1448)
[»] scaffold0048 (1 HSPs)
scaffold0048 (150-224)||(62786-62860)
[»] scaffold0565 (1 HSPs)
scaffold0565 (142-194)||(9578-9630)
[»] scaffold0110 (1 HSPs)
scaffold0110 (180-224)||(24696-24740)
[»] scaffold0758 (1 HSPs)
scaffold0758 (184-223)||(6287-6326)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29025526 - 29025749
Alignment:
Q  1 gtgcaacctaggaaaaatcattcattgcctagaaattataattttcaactgaaatcgcaactcgtgaactagaaactcttgttttcttaggttacacttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29025526 gtgcaacctaggaaaaatcattcattgcctagaaattataattttcaactgaaatcgcaactcttgaactagaaactcttgttttcttaggttacacttg 29025625  T
Q  101 tgaccaaagttgaactaaaagagagtatagcaaactattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||  |||||    
T  29025626 tgaccaaaattgaactaaaagagagtatagcaaactattctctccgtatcaaaatgagtgtcgttttaatcaattgcacacatattaaggaatagaataa 29025725  T
Q  201 agtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||||||||||    
T  29025726 agtacacaaatgtcatagcaattt 29025749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 40228808 - 40228727
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| || ||||| |||||| || | ||||||||||||||||||||||| |||||||||||| ||||||    
T  40228808 tccgtttcaaaatgagtgtcattttagtcaattgcacatatattaaggaatgaaataaagtagtcaaatgtcataacaattt 40228727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 43448950 - 43448869
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| |||||||| || ||| |||| ||||||||| ||||||||| ||||||||||||||| |||||||||||| ||||||    
T  43448950 tccgtttcaaaatgggtgtcgctttagtcaattacacacatattaatgaatgaaataaagtagtcaaatgtcatatcaattt 43448869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 39463492 - 39463410
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||||||||||||||| ||||||||| ||||||||| |||||||||    
T  39463492 ctccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaatggaataaagtagtcaaatgtcgtagcaattt 39463410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 4989706 - 4989631
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||| ||||| || ||||||||| ||||| ||||||||| |||||| ||||||||||||    
T  4989706 tcaaaatgagtttcgctttaaccaattgcatacatattaaagaatggaataaagtagtcaaatatcatagcaattt 4989631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 43084568 - 43084627
Alignment:
Q  165 tttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||| |||||| || ||||||||||||||||||||||||| ||||||||||||| |||||    
T  43084568 tttagtcaattgcacacatattaaggaatgaaataaagtagtcaaatgtcatagtaattt 43084627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 9880419 - 9880501
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||| ||||| || ||| |||||| |||| ||||||||  |||||||||||||||||||    
T  9880419 ctccgtttcaaaatgagtgtcgctttaaccaattgcacacagattaagaaatggaataaagtggtcaaatgtcatagcaattt 9880501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 34168130 - 34168212
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  |||||||| ||  ||||||||||  ||||||||| |||||||||||||||||||    
T  34168130 ctccgtttcaaaatgagtgtcgctttagccaattacacacggattaaggaattgaataaagtagtcaaatgtcatagcaattt 34168212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 4760486 - 4760559
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  ||||| || | | ||||||||||||||||||||| |||||||||||||||||||    
T  4760486 aaaatgagtgtcgctttagccaattgcacatagattaaggaatgaaataaagtagtcaaatgtcatagcaattt 4760559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 18673046 - 18673099
Alignment:
Q  171 caattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||| ||| |||||| |||||||||||||| |||||||||||| ||||||    
T  18673046 caattacacacaaattaagaaatgaaataaagtagtcaaatgtcataacaattt 18673099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 39698613 - 39698666
Alignment:
Q  171 caattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| || ||||||||||| ||||||||||||| |||||||| ||||||||||    
T  39698613 caattgcacacatattaaggtatgaaataaagtagtcaaatgttatagcaattt 39698666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 44713727 - 44713690
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaa 221  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  44713727 attaaggaatgaaataaagtagtcaaatgtcatagcaa 44713690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 8471486 - 8471411
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||  ||||| || | | |||||| |||||||||||||| |||||||||||| ||||||    
T  8471486 tcaaaatgagtgtcgctttagccaattgcacatagattaagaaatgaaataaagtagtcaaatgtcataccaattt 8471411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 31899173 - 31899248
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||  ||||| || | ||||||||||||||||||||||  || ||||||||| ||||||    
T  31899173 tcaaaatgagtgtcgctttagccaattgcacatatattaaggaatgaaataaagttgtcgaatgtcataacaattt 31899248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 34461507 - 34461582
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||  |||||  | ||| |||||||||||||||||| || |||||||||||| ||||||    
T  34461507 tcaaaatgagtgtcgctttagccaattgtacacagattaaggaatgaaataaaatagtcaaatgtcataacaattt 34461582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 7839681 - 7839619
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcat 216  Q
    ||||||||| ||||||||| |||||||| ||||  ||||||||||||||||||| |||||| ||||    
T  7839681 aaaatgagtgtcgttttaa-caattacacacat--taaggaatgaaataaagtagtcaaatatcat 7839619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 13109194 - 13109141
Alignment:
Q  171 caattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| || ||| |||||||||||||||||| || ||||||||||||| |||||    
T  13109194 caattgcacacaaattaaggaatgaaataaaatattcaaatgtcatagtaattt 13109141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 14541673 - 14541746
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||||| |||||  ||||| || ||| |||||  |||| ||||||||| |||||||||||| ||||||    
T  14541673 aaaatgagtatcattttagccaattgcatacagattaaataatggaataaagtagtcaaatgtcataacaattt 14541746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 17921163 - 17921110
Alignment:
Q  171 caattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| || ||||||||||||||  |||||| || |||||||||||||||||||    
T  17921163 caattgcacacatattaaggaattgaataaaatagtcaaatgtcatagcaattt 17921110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 27416695 - 27416655
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||  ||||||||| |||||||||||||||||||    
T  27416695 attaaggaatataataaagtagtcaaatgtcatagcaattt 27416655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 37654645 - 37654563
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||||||||  ||||| || ||||||||||||||||||||||||| |||||||||||||||||||    
T  37654645 ctccgtttcaaaatgagtgtcgttttagccaattgcacacatattaaggaatgaaataaagtagtcaaatgtcatagcaattt 37654563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 40010795 - 40010876
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| |||||||| || |||||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  40010795 tccgtttcaaaatgagtgtcgttttagtccattacacacatattaaggaatggaataaagtagtcaaatgtcatagcaattt 40010876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 50623319 - 50623237
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||    
T  50623319 ctccgttttaaaatgagtgtcgttttagtcaattacacacatattaaggaatgaaatagagtagtcaaatgtcatatcaattt 50623237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 2493336 - 2493255
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| |||||||   ||||| || ||||||||||||||||||||||||| |||||||||||||||||||    
T  2493336 tccgtttcaaaatgagtgtcgtttttgccaattgcacacatattaaggaatgaaataaagtagtcaaatgtcatagcaattt 2493255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 45889795 - 45889714
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| ||||||||  ||||| || ||||||||||||||||||||||||| |||||||| ||||||||||    
T  45889795 tccgtttcaaaatgagtgtcgttttagccaattgcacacatattaaggaatgaaataaagtagtcaaatgttatagcaattt 45889714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 53814428 - 53814501
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||| ||||  || ||||||||||||||||||||||||| |||||||||||||||||||    
T  53814428 aaaatgagtgtcgttttaaccaatcgcacacatattaaggaatgaaataaagtagtcaaatgtcatagcaattt 53814501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 45043507 - 45043592
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| || ||||||| ||| |||||||| |||||| || |||| |||||||||| ||||||||| |||||||||||||||||||    
T  45043507 tctctctgtttcaaaataagtgtcgttttagtcaattgcacacattttaaggaatgtaataaagtagtcaaatgtcatagcaattt 45043592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 49089689 - 49089616
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||||||| ||| |||||| ||||| ||||||    
T  49089689 aaaatgagtgtcgttttaatcaattgcacacatattaaggaatgaaataatgtagtcaaatatcataacaattt 49089616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 29370815 - 29370756
Alignment:
Q  165 tttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||| |||||| || ||||||||||||||||||||||||| |||||||||||||||||||    
T  29370815 tttagtcaattgcacacatattaaggaatgaaataaagtagtcaaatgtcatagcaattt 29370756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 18430224 - 18430142
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| | | ||||  ||||| || ||||||||||||||||||||||||| |||||||||||| ||||||    
T  18430224 ctccgtttcaaaatgagtgttgctttagccaattgcacacatattaaggaatgaaataaagtagtcaaatgtcataacaattt 18430142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 24941115 - 24941033
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||||||||| ||||| || |||| |||| ||||| ||||||||| |||||||||||| ||||||    
T  24941115 ctccgtttcaaaatgagtgtcgttttaaccaattgcacacatgttaaagaatggaataaagtagtcaaatgtcataacaattt 24941033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 52957712 - 52957794
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||| ||||||||||| ||||||||| |||||||||||||||||||    
T  52957712 ctccgtttcaaaatgagtgtcgctttagccaattgcacacagattaaggaatggaataaagtagtcaaatgtcatagcaattt 52957794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 17499633 - 17499718
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| | ||||||||| |||||||| |||||| || ||| ||||| |||||||||||| || |||||||||||| ||||||    
T  17499633 tctctccgttttaaaatgagtgtcgttttagtcaattgcacacagattaatgaatgaaataaaatagtcaaatgtcataacaattt 17499718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 29519456 - 29519529
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||  |||||||| |||||||||||||||||||||| || |||||| ||||| ||||||    
T  29519456 aaaatgagtgtcgttttagccaattacacacatattaaggaatgaaataaaatagtcaaatatcataacaattt 29519529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 27653902 - 27653827
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||  ||||| || ||| ||||||||||| ||||||||| |||||||||||||||||||    
T  27653902 tcaaaatgagtgtcgctttagccaattgcacacaaattaaggaatggaataaagtagtcaaatgtcatagcaattt 27653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 39985052 - 39984970
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||||||||||||||  |||||| || |||||||||||||||||||    
T  39985052 ctccgtttcaaaatgagtgtcgctttagccaattgcatacatattaaggaattgaataaaatagtcaaatgtcatagcaattt 39984970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 49080399 - 49080481
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||| ||| ||| ||||  ||||| || |||||||||||||| |||||||||| ||||||||||||| |||||    
T  49080399 ctccgtttcaaaataagtgtcgctttatccaattgcacacatattaaggaataaaataaagtagtcaaatgtcatagtaattt 49080481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 2728321 - 2728402
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| ||| ||||  ||||| || ||||||||||||||  ||||||||| |||||||||||| ||||||    
T  2728321 tccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaattgaataaagtagtcaaatgtcataacaattt 2728402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 24259835 - 24259762
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  ||||| || | ||||||||||||||||||||||| |||||||||||| ||||||    
T  24259835 aaaatgagtgtcgctttatccaattgcacatatattaaggaatgaaataaagtagtcaaatgtcataacaattt 24259762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 28116477 - 28116396
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| ||  ||||| ||||| || ||  ||||||||||| ||||||||| |||||||||||||||||||    
T  28116477 tccgtttcaaaatgagtgtcactttaaccaattgcacacggattaaggaatggaataaagtagtcaaatgtcatagcaattt 28116396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 44571796 - 44571869
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||  ||||| ||||| |||||||||||| |||||||||||| || ||||||||||||| |||||    
T  44571796 aaaatgagtgtctctttaaccaattgcaaacatattaatgaatgaaataaaatagtcaaatgtcatagtaattt 44571869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 54234055 - 54233967
Alignment:
Q  136 tattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| |||||| ||||||||||| ||| ||||  ||||| || ||| |||||| |||| |||||||||||||||| ||||| ||||||    
T  54234055 tattccctccgtttcaaaatgagtgtcgctttagccaattgcatacaaattaagaaatggaataaagtactcaaatatcatatcaattt 54233967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 55126688 - 55126648
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  55126688 attaaggaatgaaataaagtagtcaaatgtcatagcaattt 55126648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 1819797 - 1819715
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||| | ||| |||| ||||||  | ||| ||||| ||||||||||||||| |||||||||||||||||||    
T  1819797 ctccgttttaaaatgaatgtcgctttagtcaattgaacacagattaaagaatgaaataaagtagtcaaatgtcatagcaattt 1819715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 42605807 - 42605725
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||  |||||||| |||||| || ||| ||||| |||| ||||||| || |||||||||||||||||||    
T  42605807 ctccgttttaaaatgagcgtcgttttagtcaattgcacacagattaaagaataaaataaaatagtcaaatgtcatagcaattt 42605725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 47321378 - 47321296
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||||||||  ||||| || ||| ||||||||||  |||||| || |||||||||||||||||||    
T  47321378 ctccgttttaaaatgagtgtcgttttagccaattgcacacagattaaggaattgaataaaatagtcaaatgtcatagcaattt 47321296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 34316455 - 34316382
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtca 215  Q
    |||||| ||||||||||| ||  ||||| ||||| || ||| |||||||||||||||||| || ||||||||||    
T  34316455 ctccgtttcaaaatgagtgtcactttaaccaattgcacacagattaaggaatgaaataaaatagtcaaatgtca 34316382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 56373498 - 56373579
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| ||  ||||  |||||  | ||||||||||||||| ||||||||| ||||||||| |||||||||    
T  56373498 tccgtttcaaaatgagtgtcactttagccaattgaagacatattaaggaatggaataaagtagtcaaatgtcgtagcaattt 56373579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 52254045 - 52254001
Alignment:
Q  180 acatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||    
T  52254045 acatattaaggaatgaaataaagttgtcaaatgtcatagtaattt 52254001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 6462246 - 6462163
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaatttga 226  Q
    ||||| ||||||||||  ||||||||  ||||| || ||| |||||| || | ||||||||| |||||| ||||||||||||||    
T  6462246 tccgtttcaaaatgagggtcgttttagccaattgcacacagattaagaaaagtaataaagtagtcaaatttcatagcaatttga 6462163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 32140798 - 32140853
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaat 198  Q
    ||||| ||||||||||| |||||||| |||||| || ||| |||||||||||||||    
T  32140798 tccgtttcaaaatgagtgtcgttttagtcaattgcacacaaattaaggaatgaaat 32140853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 54092171 - 54092124
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaat 198  Q
    ||||||||| ||||||||||||||| || ||| |||||||||||||||    
T  54092171 aaaatgagtgtcgttttaatcaattgcatacaaattaaggaatgaaat 54092124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 34124528 - 34124446
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||| |||||| |||  ||||||||| |||||||||||| ||||||    
T  34124528 ctccgtttcaaaatgagtgtcgctttagccaattgcacacagattaagaaattgaataaagtagtcaaatgtcataacaattt 34124446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 40345269 - 40345351
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||| | ||| ||||  ||||| || ||| ||||| ||||||||||||||| |||||||||||| ||||||    
T  40345269 ctccgttttaaaatgaatgtcgctttagccaattgcacacaaattaatgaatgaaataaagtagtcaaatgtcatatcaattt 40345351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 51434176 - 51434258
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||| | ||| ||||| ||||| || | ||||||||||||| ||||||||| |||||| ||||| ||||||    
T  51434176 ctccgttttaaaatgaatgtcgctttaaccaattgcatatatattaaggaatggaataaagtagtcaaatttcataacaattt 51434258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 52847976 - 52848058
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| | ||||||  ||||| || ||| |||||| |||  ||||||||| |||||||||||||||||||    
T  52847976 ctccgttttaaaatgagtgttgttttagccaattgcatacagattaagaaattgaataaagtagtcaaatgtcatagcaattt 52848058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 20448245 - 20448192
Alignment:
Q  171 caattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| || ||||||||||||||  ||||||||| | |||||||||||||||||    
T  20448245 caattgcacacatattaaggaattgaataaagtagttaaatgtcatagcaattt 20448192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 4408138 - 4408178
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||||||||||| |||| ||||||| ||||||    
T  4408138 attaaggaatgaaataaagtagtcaagtgtcataacaattt 4408178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 19282371 - 19282411
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||||||||| |||||||||||| ||||||    
T  19282371 attaaggaatggaataaagtagtcaaatgtcataacaattt 19282411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 19878841 - 19878801
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||||||||| ||||||||| |||||||||    
T  19878841 attaaggaatggaataaagtaatcaaatgtcgtagcaattt 19878801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 34534054 - 34534094
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||  ||||||||| |||||||||||||||||||    
T  34534054 attaaggaattgaataaagtaatcaaatgtcatagcaattt 34534094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 10599601 - 10599516
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| | ||||||||| ||||||||||||||| || | ||||||||||||| ||||||||| |||||||||||||||||||    
T  10599601 tctctccgttttaaaatgagtgtcgttttaatcaattgcacatatattaaggaatggaataaagtagtcaaatgtcatagcaattt 10599516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 1742226 - 1742144
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||||||||||||||| ||||||||| |||||||||||||||||||    
T  1742226 ctccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaatggaataaagtagtcaaatgtcatagcaattt 1742144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 35778062 - 35777972
Alignment:
Q  134 actattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||| ||||||||| | ||||||||||||| ||||   |||| || ||||||||||||||||||||||||| |||||||||||| ||||||    
T  35778062 actactctctccgttttaaaatgagtatcgctttagctaattgcacacatattaaggaatgaaataaagtagtcaaatgtcataacaattt 35777972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 13405052 - 13405125
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||| ||||| || |||||||||| |||||||||||||| ||||||||| |||||||||    
T  13405052 aaaatgagtgtcgttttaaccaattgcacacatattaagaaatgaaataaagtagtcaaatgtcgtagcaattt 13405125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 16564728 - 16564801
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||| ||||| || ||| ||||||||||||||||||||| |||||||||||||||||||    
T  16564728 aaaatgagtgtcgctttaaccaattgcatacagattaaggaatgaaataaagtagtcaaatgtcatagcaattt 16564801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 16600934 - 16600861
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||| ||||| || ||| ||||||||||||||||||||| |||||||||||||||||||    
T  16600934 aaaatgagtgtcgctttaaccaattgcatacagattaaggaatgaaataaagtagtcaaatgtcatagcaattt 16600861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 48684949 - 48684876
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||||||||| || ||| ||||||||||||||||||||| |||||||||||| ||||||    
T  48684949 aaaatgagtgtcgctttaatcaattgcacacagattaaggaatgaaataaagtagtcaaatgtcataacaattt 48684876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 37815959 - 37815877
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||||||||  ||||| || ||||||||| ||||| |||||| || |||||||||||||||||||    
T  37815959 ctccgttttaaaatgagtgtcgttttagccaattgcacacatattaaagaatggaataaaatagtcaaatgtcatagcaattt 37815877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 6522054 - 6521973
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaatt 223  Q
    |||||| | ||||||||| ||| ||||  ||||| || ||| ||||||||||||||||||||| |||||||||||| |||||    
T  6522054 ctccgttttaaaatgagtgtcgctttagccaattgcacacaaattaaggaatgaaataaagtagtcaaatgtcataacaatt 6521973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 7795160 - 7795241
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| ||| ||||  |||||  | ||| ||||||||||||||||||||| | |||||||||||||||||    
T  7795160 tccgtttcaaaatgagtgtcgctttagccaattgtacacaaattaaggaatgaaataaagtagtaaaatgtcatagcaattt 7795241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 10684748 - 10684829
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||| ||| |||||||||||||||||| | |||||||||||| ||||||| || | |||| ||||| ||||||    
T  10684748 tccgtttcaaaataagtgtcgttttaatcaattacacatatattaaggaataaaataaaatagttaaatatcataacaattt 10684829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 27947418 - 27947499
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| ||  ||||| ||||| || ||||||||| ||||  ||||||||| |||||||||||||||||||    
T  27947418 tccgtttcaaaatgagtgtcactttaaccaattgcacacatattaatgaattgaataaagtagtcaaatgtcatagcaattt 27947499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 29530860 - 29530933
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  ||||| || ||| |||||||||| |||||||||| |||||||||||||||||||    
T  29530860 aaaatgagtgtcgatttagccaattgcacacagattaaggaataaaataaagtagtcaaatgtcatagcaattt 29530933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 31418438 - 31418511
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||| ||| ||||||||||| || | |||||||| |||| ||||||||| |||||||||||||||||||    
T  31418438 aaaataagtgtcgctttaatcaattgcacatatattaagaaatggaataaagtagtcaaatgtcatagcaattt 31418511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 45948555 - 45948628
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| |||||||| ||||| ||| |||||||| | |||  ||||||||| |||||||||||||||||||    
T  45948555 aaaatgagtgtcgttttagtcaatcacacacatattacgaaatagaataaagtagtcaaatgtcatagcaattt 45948628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 24680352 - 24680281
Alignment:
Q  153 aatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||| ||||||||   |||| || | ||||||||||||||||||||||| |||||||||||| ||||||    
T  24680352 aatgagtgtcgttttagctaattgcacatatattaaggaatgaaataaagtagtcaaatgtcataacaattt 24680281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 19276531 - 19276616
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||| | ||||||| ||| ||| ||||  ||||| || ||| ||||||||||||| ||||||| |||||||| ||||||||||    
T  19276531 tctctccatttcaaaatcagtgtcgctttagccaattgcacacagattaaggaatgaagtaaagtagtcaaatgttatagcaattt 19276616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 44453359 - 44453286
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||  ||||| || ||| ||||| ||||| ||||||||| |||||||||||| ||||||    
T  44453359 aaaatgagtgtcgttttagccaattgcatacagattaaagaatggaataaagtagtcaaatgtcataacaattt 44453286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 19906649 - 19906567
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || |   ||||||||||| |||||| || |||||||||||||||||||    
T  19906649 ctccgtttcaaaatgagtgtcgctttagccaattgcacatggattaaggaatggaataaaatagtcaaatgtcatagcaattt 19906567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 32345752 - 32345834
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||| |||||| |||  ||||||||| |||||||||||| ||||||    
T  32345752 ctccgtttcaaaatgagtgtcgctttagccaattgcacacagattaagaaattgaataaagtagtcaaatgtcataacaattt 32345834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 23155387 - 23155460
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||| ||||  ||||| || ||| ||||| ||||  ||||||||| | |||||||||||||||||    
T  23155387 aaaatgagtatcgctttagccaattgcatacagattaaagaattgaataaagtagttaaatgtcatagcaattt 23155460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 26963715 - 26963634
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| | | ||||| || ||||| ||| |||||| |||| |||||| || |||||||||||| ||||||    
T  26963715 tccgtttcaaaatgagtgttgctttaaccatttacacacaaattaagaaatggaataaaatagtcaaatgtcataacaattt 26963634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 36447016 - 36447069
Alignment:
Q  171 caattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| || ||| ||||| ||||| ||||||||| |||||||||||||||||||    
T  36447016 caattgcacacaaattaatgaatggaataaagtagtcaaatgtcatagcaattt 36447069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 36808140 - 36808087
Alignment:
Q  171 caattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| || ||||||||| ||||  ||||||||| |||||||||||||||||||    
T  36808140 caattgcatacatattaaagaatataataaagtagtcaaatgtcatagcaattt 36808087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 41137954 - 41137881
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| || ||||| | |||| || | |||||||  |||| ||||||||| |||||||||||||||||||    
T  41137954 aaaatgagtgtcattttagtgaattgcacatatattaaaaaatggaataaagtagtcaaatgtcatagcaattt 41137881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 42879859 - 42879932
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  ||||| || ||| | ||||||||| |||||||||  ||||||||||||||||||    
T  42879859 aaaatgagtgtcgctttagccaattgcacacagagtaaggaatggaataaagtaggcaaatgtcatagcaattt 42879932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 23935614 - 23935574
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||| ||||||||| |||||||||||||||||||    
T  23935614 attaaagaatggaataaagtagtcaaatgtcatagcaattt 23935574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 31416710 - 31416750
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||||||||||| |||||||||| | ||||||    
T  31416710 attaaggaatgaaataaagtaatcaaatgtcaaaacaattt 31416750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 39117400 - 39117488
Alignment:
Q  136 tattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| |||||| | ||||||||| ||| ||||  || || || ||| ||||| ||||| ||||||||| |||||||||||| ||||||    
T  39117400 tattccctccgttttaaaatgagtgtcgctttatccacttgcacacagattaaagaatggaataaagtagtcaaatgtcataacaattt 39117488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 40299073 - 40299017
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaat 198  Q
    |||||| ||||||||||| ||||||||  ||||| || ||| |||||||||||||||    
T  40299073 ctccgtttcaaaatgagtgtcgttttagccaattgcacacaaattaaggaatgaaat 40299017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 42329463 - 42329544
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||||||| ||||| ||||| || ||| ||||||||||||||||||||| |||||||||||||||||||    
T  42329463 tccgtttcaaaatgagtatcgctttaaccaattgcacacaaattaaggaatgaaataaagtagtcaaatgtcatagcaattt 42329544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 39566411 - 39566336
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||    
T  39566411 tcaaaatgagtgtcgctttaaccaattacacacatattaaggaatgaaataaagtagtcaaatgtcataacaattt 39566336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 42103971 - 42104063
Alignment:
Q  132 aaactattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| || |||||| ||||||||||| ||| ||||  ||||| || ||||||||||||||| ||||||||| |||||||||||||||||||    
T  42103971 aaactactccctccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaatggaataaagtagtcaaatgtcatagcaattt 42104063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 3305934 - 3306009
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||||||||| ||||| ||   ||||||||||||||||||||||| |||||||||||||||||||    
T  3305934 tcaaaatgagtgtcgttttaaccaattgcacgtatattaaggaatgaaataaagtagtcaaatgtcatagcaattt 3306009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 6519203 - 6519130
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| |||||||| | ||||||| ||||||||||||||||||||||||| | |||||||||| ||||||    
T  6519203 aaaatgagtgtcgttttagttaattacacacatattaaggaatgaaataaagtagtaaaatgtcataacaattt 6519130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 39730172 - 39730099
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||  ||||| || ||||||||||||||| ||||||||| |||||||||||||||||||    
T  39730172 aaaatgagtgtcgttttaggcaattgcacacatattaaggaatggaataaagtagtcaaatgtcatagcaattt 39730099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 42978002 - 42978073
Alignment:
Q  153 aatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||| ||||||||  ||||| || ||| ||||||||||||||||||||| |||||||||||||||||||    
T  42978002 aatgagtgtcgttttagccaatttcacacagattaaggaatgaaataaagtagtcaaatgtcatagcaattt 42978073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 26660989 - 26660907
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||| ||||  ||||| || ||||||||||||||||||||||||  |||||||||||||||||||    
T  26660989 ctccgttttaaaatgagtgtcgctttagccaattgcacacatattaaggaatgaaataaagttgtcaaatgtcatagcaattt 26660907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 26932582 - 26932500
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||| ||||  ||||| || ||||||||||||||||||||||||  |||||||||||||||||||    
T  26932582 ctccgttttaaaatgagtgtcgctttagccaattgcacacatattaaggaatgaaataaagttgtcaaatgtcatagcaattt 26932500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 8336334 - 8336407
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||  |||||||| | ||||||||||||| ||||||||| |||||||||||| ||||||    
T  8336334 aaaatgagtgtcgttttagccaattacacaaatattaaggaatggaataaagtagtcaaatgtcataacaattt 8336407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 42661865 - 42661940
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||  ||||| || |||||||||||||||||||||| || |||||||||||| ||||||    
T  42661865 tcaaaatgagtgtcgctttagccaattgcacacatattaaggaatgaaataaaatagtcaaatgtcataacaattt 42661940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 33822419 - 33822501
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||| ||||||||||| ||||| || ||| |||||  ||||||||||| || |||||||| ||||||||||    
T  33822419 ctccgtttcaaaatgaatatcgttttaaccaattgcacacagattaattaatgaaataaaatagtcaaatgttatagcaattt 33822501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 2729705 - 2729786
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||| | ||| ||||  ||||| || ||| ||||||||||||||||||||| ||||| |||||||||||||    
T  2729705 tccgtttcaaaatgattgtcgctttagccaattgcatacagattaaggaatgaaataaagtagtcaaacgtcatagcaattt 2729786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 14006120 - 14006045
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| | | ||||  ||||| || | ||||||||||||||||||||||| |||||||||||||| ||||    
T  14006120 tcaaaatgagtgttgctttagccaattgcatatatattaaggaatgaaataaagtagtcaaatgtcatagctattt 14006045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 34445955 - 34446022
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatag 218  Q
    ||||||||| ||| ||||| ||||| || | ||||||||||||||||||||||| |||||| ||||||    
T  34445955 aaaatgagtgtcgctttaaccaattgcacatatattaaggaatgaaataaagtagtcaaatatcatag 34446022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 14620424 - 14620494
Alignment:
Q  154 atgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||| ||||  ||||| || ||||||||||||||  ||||||||| |||||||||||||||||||    
T  14620424 atgagtgtcgctttagccaattgcacacatattaaggaatagaataaagtagtcaaatgtcatagcaattt 14620494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 793531 - 793604
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||  |||||||  ||||| || ||| ||||||||||| ||||||||| || ||||||||||||||||    
T  793531 aaaatgagtgccgttttagccaattgcacacaaattaaggaatggaataaagtagtccaatgtcatagcaattt 793604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 29653439 - 29653512
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||  ||||| || ||  ||||| |||||||||||| || |||||||||||||||||||    
T  29653439 aaaatgagtgtcgttttagccaattgcatacggattaaagaatgaaataaaatagtcaaatgtcatagcaattt 29653512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 39504951 - 39504878
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| |||| ||||||||  ||||||||| ||||||||||||||| | ||||||| || ||||||    
T  39504951 aaaatgagtgtcgctttagtcaattacgtacatattaaagaatgaaataaagtagtaaaatgtcgtaacaattt 39504878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 34919963 - 34919911
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaa 201  Q
    ||||||||||||||| ||||  |||||||| ||| ||||||||||||||||||    
T  34919963 tcaaaatgagtatcgctttagccaattacacacagattaaggaatgaaataaa 34919911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 4742193 - 4742240
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaat 198  Q
    ||||||||| |||||||| |||||| || |||||||||||||||||||    
T  4742193 aaaatgagtgtcgttttagtcaattgcacacatattaaggaatgaaat 4742240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 4833563 - 4833636
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  ||||| || | || |||||||||||||||||||| | |||||||||| ||||||    
T  4833563 aaaatgagtgtcgctttagccaattgcacatatgttaaggaatgaaataaagtagttaaatgtcataacaattt 4833636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 27652246 - 27652319
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  |||||||| ||| |||||| |||| |||||| || |||||||||||| ||||||    
T  27652246 aaaatgagtgtcgctttaggcaattacacacagattaagaaatggaataaaatagtcaaatgtcataacaattt 27652319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 27600591 - 27600555
Alignment:
Q  180 acatattaaggaatgaaataaagtactcaaatgtcat 216  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  27600591 acatattaaggaatgaaataaagtagtcaaatatcat 27600555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 10843014 - 10842933
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| |||||||| |||||| || | ||||||||||||||||||||||| |||||||||||||||||||    
T  10843014 tccgtttcaaaatgagtgtcgttttagtcaattgcacaaatattaaggaatgaaataaagtagtcaaatgtcatagcaattt 10842933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 9333308 - 9333232
Alignment:
Q  148 atcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||||||||| ||||| |||||| | ||| ||||||||||||||||||||| |||||||||||||||||||    
T  9333308 atcaaaatgagtatcgatttaaccaattatatacagattaaggaatgaaataaagtagtcaaatgtcatagcaattt 9333232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 9357081 - 9357005
Alignment:
Q  148 atcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||||||||| ||||| |||||| | ||| ||||||||||||||||||||| |||||||||||||||||||    
T  9357081 atcaaaatgagtatcgatttaaccaattatatacagattaaggaatgaaataaagtagtcaaatgtcatagcaattt 9357005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 31491676 - 31491768
Alignment:
Q  132 aaactattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||| | ||||||||| ||||||||   |||| |||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  31491676 aaactactctctccgttttaaaatgagtgtcgttttagcaaattgcaaacatattcaggaatggaataaagtagtcaaatgtcatagcaattt 31491768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 254829 - 254911
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| |||| ||||||||| ||| |||||| |||||| ||||||| |||||||||||||||||||    
T  254829 ctccgtttcaaaatgagtgtcgctttagtcaattacacacagattaagaaatgaactaaagtagtcaaatgtcatagcaattt 254911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 9915679 - 9915597
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||||||||   ||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  9915679 ctccgtttcaaaatgagtgtcgttttagctaataacacacatattaaggaatgtaataaagtagtcaaatgtcatagcaattt 9915597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 48009245 - 48009163
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| |||||||| |||||| || |||||||||||||||||||||| || |||||| |||||| |||||    
T  48009245 ctccgtttcaaaatgagtgtcgttttagtcaattgcacacatattaaggaatgaaataaaatagtcaaatatcatagtaattt 48009163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 1740550 - 1740638
Alignment:
Q  136 tattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||||| ||||||||| | ||||||||  ||||||||  |||||||| ||||| |||||||||||||||||| ||| ||||||    
T  1740550 tattctctccgtttcaaaatgaatgtcgttttagccaattacacgcatattaaagaatggaataaagtactcaaatgtaataacaattt 1740638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 32806851 - 32806936
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||| | ||| ||||  || || || ||||||||||||||| ||||||||| |||||||||||||||||||    
T  32806851 tctctccgtttcaaaatgattgtcgctttagccagttgcacacatattaaggaatggaataaagtagtcaaatgtcatagcaattt 32806936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 40717287 - 40717360
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||| ||||||||||||||| || |||||||| |||||| ||||||||| |||||| ||||||||||||    
T  40717287 aaaataagtgtcgttttaatcaattgcacacatattacggaatggaataaagtagtcaaatatcatagcaattt 40717360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 11134385 - 11134452
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcat 216  Q
    ||||||||||| ||||||||  ||||| || ||||||||||||||| ||||||||| |||||||||||    
T  11134385 tcaaaatgagtgtcgttttagccaattgcacacatattaaggaatggaataaagtagtcaaatgtcat 11134452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 43759540 - 43759485
Alignment:
Q  169 atcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||    
T  43759540 atcaattacacacaaattaaggaatgaaataaagtagtcaaatgtaatagcaattt 43759485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 46286741 - 46286812
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagca 220  Q
    ||||||||||| ||||||||||||||| || |||||||||| |||  |||||||||  ||||||||||||||    
T  46286741 tcaaaatgagtgtcgttttaatcaattgcacacatattaagaaatagaataaagtagacaaatgtcatagca 46286812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 49468634 - 49468709
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||  ||||| || ||| |||||||||||||||||| || |||||||||||||||||||    
T  49468634 tcaaaatgagtgtcgctttagccaattgcacacagattaaggaatgaaataaaatagtcaaatgtcatagcaattt 49468709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 15823260 - 15823187
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||||||||  ||||| || |||||||||| |||| |||||| || | |||||||||||||||||    
T  15823260 aaaatgagtatcgttttagccaattgcacacatattaagaaatggaataaaatagttaaatgtcatagcaattt 15823187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 43358139 - 43358212
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||| | |||||||| ||||||  | | |||||||||||||||||||| || |||||||||||||||||||    
T  43358139 aaaatgaatgtcgttttagtcaattgtacatatattaaggaatgaaataaaatagtcaaatgtcatagcaattt 43358212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 26252360 - 26252272
Alignment:
Q  136 tattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||||| ||||||||||| | | ||||| ||||| || ||| |||||||||||  || ||||| ||||||||||| |||||||    
T  26252360 tattctctccgtttcaaaatgagtgttgctttaaccaattgcacacagattaaggaatgggattaagtagtcaaatgtcattgcaattt 26252272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 35847862 - 35847934
Alignment:
Q  152 aaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||| ||| |||| |||||| || ||||||||||||||  ||||||||| |||||||||||| ||||||    
T  35847862 aaatgagtgtcgctttactcaattgcacacatattaaggaattgaataaagtagtcaaatgtcataacaattt 35847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 7213950 - 7214037
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacat-----attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| || ||||| ||||||||  ||||     ||||||||||||||||||||| |||||| ||||||||||||    
T  7213950 ctccgtttcaaaatgagtgtccttttagtcaattacgcacatattacattaaggaatgaaataaagtagtcaaatatcatagcaattt 7214037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 5463809 - 5463728
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| ||| ||||  ||||| || | ||||||||||||| ||||||||| |||| ||||||| ||||||    
T  5463809 tccgtttcaaaatgagtgtcgctttagccaattgcacatatattaaggaatgcaataaagtagtcaattgtcataacaattt 5463728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 22665162 - 22665089
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| |||| |||||| || ||| ||||| ||||| ||||||||| |||||| ||||||||||||    
T  22665162 aaaatgagtgtcgctttagtcaattgcacacagattaacgaatggaataaagtagtcaaatatcatagcaattt 22665089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 34110761 - 34110692
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatg 212  Q
    ||||| |||||||||| | |||||||  |||||||| ||| ||||| ||||||||||||||| |||||||    
T  34110761 tccgtttcaaaatgagaaacgttttagccaattacatacaaattaatgaatgaaataaagtagtcaaatg 34110692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 44582705 - 44582778
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| |||| | |||| || ||| ||||| ||||||||||||||| |||||||||||| ||||||    
T  44582705 aaaatgagtgtcgctttagtgaattgcacacagattaatgaatgaaataaagtagtcaaatgtcataacaattt 44582778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 49426336 - 49426417
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| ||| ||||  ||||| || ||||||||||||||| ||| ||||| |||||||| ||| ||||||    
T  49426336 tccgtttcaaaatgagtgtcgctttaggcaattgcacacatattaaggaatggaatgaagtagtcaaatgtgatatcaattt 49426417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 9552315 - 9552355
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  9552315 attaatgaatgaaataaagtagtcaaatgtcatagcaattt 9552355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 672207 - 672282
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||||||||| ||||| || ||| ||||  ||||| ||||||||| |||||| ||||| ||||||    
T  672207 tcaaaatgagtgtcgttttaaccaattgcacacagattatagaatggaataaagtagtcaaatatcatatcaattt 672282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 42650174 - 42650249
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| | ||| ||||  ||||| || ||| ||||| || |||||||||||| |||||||||||||||||||    
T  42650174 tcaaaatgaatgtcgctttagccaattgcacacagattaaagactgaaataaagtaatcaaatgtcatagcaattt 42650249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 2459240 - 2459158
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||| |||||| ||| |||| ||||| |||||||||||| ||||||    
T  2459240 ctccgtttcaaaatgagtgtcgctttagccaattgcacacagattaagaaattaaatgaagtagtcaaatgtcataacaattt 2459158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 12002473 - 12002424
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaat 198  Q
    ||||||||||| ||||||||  ||||| || |||||||||||||||||||    
T  12002473 tcaaaatgagtgtcgttttagacaattgcacacatattaaggaatgaaat 12002424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 38530764 - 38530837
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  |||||| | ||| |||||| |||||||||||||| |||||||||  ||||||||    
T  38530764 aaaatgagtgtcgctttagccaattatatacagattaagaaatgaaataaagtagtcaaatgtcgcagcaattt 38530837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 44108807 - 44108754
Alignment:
Q  171 caattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| || |||||||||||||||||| |||||| | |||||||||| ||||||    
T  44108807 caattgcacacatattaaggaatgaaacaaagtagttaaatgtcataacaattt 44108754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 49895007 - 49894934
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| |||||||   ||||| || ||| ||||||||||| |||||| || |||||||||||| ||||||    
T  49895007 aaaatgagtgtcgttttggccaattgcacacagattaaggaatggaataaaatagtcaaatgtcataacaattt 49894934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 28751333 - 28751385
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaa 201  Q
    ||||||||||| ||||||||  ||||| || ||| ||||||||||||||||||    
T  28751333 tcaaaatgagtgtcgttttagccaattgcacacagattaaggaatgaaataaa 28751385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 38016600 - 38016527
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||  || |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  38016600 aaaatgagtcccgctttaatcaattacacacatattaaggaatgaaataaagtagtcaaatgtcatagtaattt 38016527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 3152731 - 3152804
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||| ||||| || ||||||||||||||||||||||||| ||| |||||||| ||||||    
T  3152731 aaaatgagtgtcgttttaaccaattgcacacatattaaggaatgaaataaagtagtcagatgtcataacaattt 3152804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 44676459 - 44676374
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||||| | ||||||  |||||||| ||||||||||||||  ||||||||| | |||||||||||||||||    
T  44676459 tctctccgtttcaaaatgagtgttgttttagccaattacacacatattaaggaatagaataaagtagttaaatgtcatagcaattt 44676374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 45213646 - 45213719
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  ||||| || ||||||||||||||||||||||||| |||||||||||||||||||    
T  45213646 aaaatgagtgtcgctttagccaattgcacacatattaaggaatgaaataaagtagtcaaatgtcatagcaattt 45213719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 33193953 - 33194028
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| |||| |||||| || ||| ||||||||||||||||||||| |||||||||||| ||||||    
T  33193953 tcaaaatgagtgtcgctttagtcaattgcacacagattaaggaatgaaataaagtagtcaaatgtcataacaattt 33194028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 41287411 - 41287493
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  |||||||| |||||||||||| ||| |||||||  |||||||||||||||||||    
T  41287411 ctccgtttcaaaatgagtgtcgctttagccaattacacacatattaaggattgagataaagtggtcaaatgtcatagcaattt 41287493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 47895259 - 47895341
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||| ||||  ||||| || ||||||||||||||||||||||||| ||| |||||||||||||||    
T  47895259 ctccgttttaaaatgagtgtcgctttagccaattgcacacatattaaggaatgaaataaagtagtcatatgtcatagcaattt 47895341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 36541719 - 36541646
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||| |||||||| | |||||||||||||||||||| || |||||||| ||||||||||    
T  36541719 aaaatgagtgtcgctttaaccaattacacatatattaaggaatgaaataaaatagtcaaatgttatagcaattt 36541646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 51482162 - 51482102
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaat 211  Q
    ||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||| ||||||    
T  51482162 aaaatgagtgtcgttttaaacaattacacacagattaaggaatgaaataaagtagtcaaat 51482102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 32303828 - 32303903
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| |||||||||  |||   | ||| ||||||||||||||||||||| |||||||||||||||||||    
T  32303828 tcaaaatgagtgtcgttttaactaatcgtacacagattaaggaatgaaataaagtagtcaaatgtcatagcaattt 32303903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 39359148 - 39359073
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| |||||||| ||||||  | | | ||||||||||||||||||||| |||||||||||| ||||||    
T  39359148 tcaaaatgagtgtcgttttagtcaattgtatataaattaaggaatgaaataaagtagtcaaatgtcataacaattt 39359073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 43169564 - 43169497
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcat 216  Q
    ||||||| ||| |||||||| ||||||||| | | ||||||||||||||||||||| |||||||||||    
T  43169564 tcaaaattagtgtcgttttagtcaattacacaaagattaaggaatgaaataaagtagtcaaatgtcat 43169497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 2458243 - 2458161
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||  ||||  ||||| || ||||||||||||||| ||||||||| | |||||||||||||||||    
T  2458243 ctccgtttcaaaatgagtgtcactttagccaattgcacacatattaaggaatgcaataaagtagtaaaatgtcatagcaattt 2458161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 23525231 - 23525313
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| |||| |||||| ||||||||  ||||| || ||||||||||||| | ||||||||| |||||||||||| ||||||    
T  23525231 ctccgtttcaatatgagtgtcgttttagccaattgcacacatattaaggaagggaataaagtagtcaaatgtcataacaattt 23525313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 53200596 - 53200678
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| |||||||||||  |  |||| ||||||||| | | ||||| ||||||||||||||| |||||||||||||||||||    
T  53200596 ctccgtttcaaaatgagtgccactttagtcaattacacaaagattaaagaatgaaataaagtagtcaaatgtcatagcaattt 53200678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 53560904 - 53560826
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcata 217  Q
    ||||||||| | ||||| ||| ||||||||  |||||||| |||||||||||||| |||||||||| | ||||||||||    
T  53560904 tctctccgttttaaaataagtgtcgttttagccaattacatacatattaaggaataaaataaagtagttaaatgtcata 53560826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 41850615 - 41850534
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| |||||||||||  || ||||   |||| || ||||||||||||||||||||||||| |||||||||||| ||||||    
T  41850615 tccgtttcaaaatgagtggcgctttagctaattgcacacatattaaggaatgaaataaagtagtcaaatgtcataacaattt 41850534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 44645575 - 44645494
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||| | | ||||||||   ||||||| ||||||||| ||||||||||||||| |||||| ||||||||||||    
T  44645575 tccgtttcaaaataaatgtcgttttagctaattacacacatattaaagaatgaaataaagtagtcaaatatcatagcaattt 44645494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 49471012 - 49470927
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| | |||||||||||||||||||  |||| || ||| ||||| ||||  |||||| || |||||||||||||||||||    
T  49471012 tctctccgttttaaaatgagtatcgttttaaataattgcacacaaattaaagaattgaataaaatagtcaaatgtcatagcaattt 49470927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 54933130 - 54933203
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  ||||| || | ||||||||||||||||||||||| |||||||||||| ||||||    
T  54933130 aaaatgagtgtcgctttagccaattgcacatatattaaggaatgaaataaagtagtcaaatgtcataacaattt 54933203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 2988520 - 2988608
Alignment:
Q  136 tattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| |||||| ||||||||||| ||| ||||  ||||| || |   ||||||||||| ||||||||| |||||||||||||||||||    
T  2988520 tattccctccgtttcaaaatgagtgtcgctttagccaattgcacatggattaaggaatggaataaagtagtcaaatgtcatagcaattt 2988608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 43687793 - 43687881
Alignment:
Q  136 tattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| |||||| ||||||| ||| |||||||| |||||| || ||  ||||| ||||| ||||||||| |||||||||||| ||||||    
T  43687793 tattccctccgtttcaaaataagtgtcgttttagtcaattgcacacggattaatgaatggaataaagtagtcaaatgtcataacaattt 43687881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 51381954 - 51381883
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagca 220  Q
    ||||||||||| ||| |||| |||||| || ||| |||||||||||||||||| || |||||| ||||||||    
T  51381954 tcaaaatgagtgtcgctttagtcaattgcacacagattaaggaatgaaataaaatagtcaaatatcatagca 51381883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 25722369 - 25722459
Alignment:
Q  134 actattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||| |||||| || ||||||| ||||||| ||||  ||||| || ||| |||||| |||| ||||||||| |||||||||||| ||||||    
T  25722369 actactctctctgtttcaaaataagtatcgatttagccaattgcacacagattaagaaatggaataaagtagtcaaatgtcataacaattt 25722459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 51398245 - 51398163
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||| |||||| |||||||||||||| |||||||| ||| ||||||    
T  51398245 ctccgtttcaaaatgagtgtcgctttagccaattgcacacagattaagaaatgaaataaagtaatcaaatgttataacaattt 51398163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 54261652 - 54261570
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  |||||||| ||| |||||| |||  ||||||||| |||||||||||| ||||||    
T  54261652 ctccgtttcaaaatgagtgtcgctttagccaattacacacagattaagaaattgaataaagtagtcaaatgtcataacaattt 54261570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 38364029 - 38363944
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| | ||||||||| ||||||||  ||||| || ||| |||||  |||| ||||||| | |||||||||||||||||||    
T  38364029 tctctccgttttaaaatgagtgtcgttttagccaattgcatacagattaaccaatggaataaagcagtcaaatgtcatagcaattt 38363944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 47138199 - 47138118
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||||| ||  |||| |||||| || |||||||||  |||  ||||||||| |||||||||||||||||||    
T  47138199 tccgtttcaaaatgagtgtcactttagtcaattgcacacatattaaataattgaataaagtagtcaaatgtcatagcaattt 47138118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 30431313 - 30431273
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  30431313 attaaggaatgaaataaagtagtcaaatgtcataacaattt 30431273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 20512412 - 20512494
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||| |||| |||||| || ||| |||||| |||  |||||| || |||||||||||||||||||    
T  20512412 ctccgttttaaaatgagtgtcgctttagtcaattgcacacagattaagaaattgaataaaatagtcaaatgtcatagcaattt 20512494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 35557668 - 35557750
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||| | | ||||||||  || || || ||| ||||| |||| |||||||||| |||||||||||||||||||    
T  35557668 ctccgtttcaaaataaatgtcgttttagccatttgcacacagattaatgaattaaataaagtaatcaaatgtcatagcaattt 35557750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 30426267 - 30426320
Alignment:
Q  171 caattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| || ||| ||||||||||| |||| |||| |||||||||||||||||||    
T  30426267 caattgcacacagattaaggaatggaatatagtagtcaaatgtcatagcaattt 30426320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 31290892 - 31290948
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaat 198  Q
    |||||| | ||||||||| ||||||||  |||||||| ||| |||||||||||||||    
T  31290892 ctccgttttaaaatgagtgtcgttttagccaattacacacagattaaggaatgaaat 31290948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 44648328 - 44648384
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaat 198  Q
    |||||| ||||||||||| ||||||||  ||||| || ||| |||||||||||||||    
T  44648328 ctccgtttcaaaatgagtgtcgttttagccaattgcacacagattaaggaatgaaat 44648384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 441149 - 441231
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||||||||  ||||| || ||| ||||||||||| ||||||||| |||||||||||||||||||    
T  441149 ctccgtttcaaaatgagtgtcgttttagccaattgcacacaaattaaggaatggaataaagtagtcaaatgtcatagcaattt 441231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 4133257 - 4133175
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||||||||||||||| ||||||||| |||||||||||||||||||    
T  4133257 ctccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaatggaataaagtagtcaaatgtcatagcaattt 4133175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 29396605 - 29396680
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||||||||  ||||| || ||| ||||||||||||||||||||| ||||||||| |||||||||    
T  29396605 tcaaaatgagtgtcgttttagccaattgcacacagattaaggaatgaaataaagtagtcaaatgtcgtagcaattt 29396680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 38926833 - 38926759
Alignment:
Q  150 caaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||| ||| |||| |||||| || ||||||||| ||||||||||||||| |||||||||||| ||||||    
T  38926833 caaaatgagtgtcgctttagtcaattgcacacatattaatgaatgaaataaagtagtcaaatgtcataacaattt 38926759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 42753981 - 42753900
Alignment:
Q  143 tccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||| | ||| ||||  |||||||| ||||||||| |||||||||||||||  ||||||||||||||||||    
T  42753981 tccgtttcaaaatgactgtcgctttagccaattacacacatattaaagaatgaaataaagtagacaaatgtcatagcaattt 42753900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 29809041 - 29808966
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||  ||||| || ||| ||||||||||||||||||||| ||||||||| |||||||||    
T  29809041 tcaaaatgagtgtcgctttagccaattgcacacaaattaaggaatgaaataaagtagtcaaatgtcgtagcaattt 29808966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 38809926 - 38809851
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||||||||||  ||||| || ||| ||||||||| | ||||||||  |||||||||||||||||||    
T  38809926 tcaaaatgagtatcgttttagccaattgcacacagattaaggaaaggaataaagtggtcaaatgtcatagcaattt 38809851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 12342328 - 12342246
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||||||||  ||||| || |  |||||||||||||||||||||| |||||||||||| ||||||    
T  12342328 ctccgttttaaaatgagtgtcgttttagccaattgcacatttattaaggaatgaaataaagtagtcaaatgtcataacaattt 12342246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 32227929 - 32228011
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||| || |||| ||||  ||||| || ||| ||||||||||||||||||||| |||||||||||| ||||||    
T  32227929 ctccgtttcaaaataagcatcgctttagccaattgcacacaaattaaggaatgaaataaagtattcaaatgtcataacaattt 32228011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 39866597 - 39866671
Alignment:
Q  151 aaaatgagtatcgttttaatcaatta-caaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||||| |||||  || ||| ||||||||||| ||||||||| |||||||||||||||||||    
T  39866597 aaaatgagtgtcgttttaaccaatttgcacacagattaaggaatggaataaagtagtcaaatgtcatagcaattt 39866671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 8774278 - 8774205
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| | |||||| |||||| || ||||||||||||||| |||||| || |||||||||||| ||||||    
T  8774278 aaaatgagtgttgttttagtcaattgcacacatattaaggaatgtaataaaatagtcaaatgtcataacaattt 8774205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 8789357 - 8789430
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| | ||||||  ||||| || |||||||||||||||||||||| || |||||||||||| ||||||    
T  8789357 aaaatgagtgttgttttagacaattgcacacatattaaggaatgaaataaaatagtcaaatgtcataacaattt 8789430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 42743221 - 42743181
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  42743221 attaaggaatgaaataaagtagtcaaatgtcatagcaattt 42743181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 6220362 - 6220404
Alignment:
Q  182 atattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  6220362 atattaagaaatgaaataaagtagtcaaatgtcatagcaattt 6220404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 13562219 - 13562153
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcata 217  Q
    ||||||||| |||||||  |||||| || ||||||||||||||| || |||||| ||||||||||||    
T  13562219 aaaatgagtgtcgtttttgtcaattgcacacatattaaggaatggaagaaagtagtcaaatgtcata 13562153  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 16807435 - 16807517
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||| ||||  ||||| || ||||||||| ||||| ||||||||| |||||||||||| ||||||    
T  16807435 ctccgttttaaaatgagtgtcgctttagccaattgcacacatattaatgaatggaataaagtagtcaaatgtcataacaattt 16807517  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 16846716 - 16846798
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||| ||||  ||||| || ||||||||| ||||| ||||||||| |||||||||||| ||||||    
T  16846716 ctccgttttaaaatgagtgtcgctttagccaattgcacacatattaatgaatggaataaagtagtcaaatgtcataacaattt 16846798  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 14698217 - 14698142
Alignment:
Q  149 tcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||| ||| ||||  ||||| || ||| |||||| |||  ||||||||| |||||||||||||||||||    
T  14698217 tcaaaatgagtgtcgctttagccaattgcacacagattaagaaattgaataaagtagtcaaatgtcatagcaattt 14698142  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 18374377 - 18374432
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtact 206  Q
    ||||||||||||| ||||||||||| |||||| ||||| |||| ||||||| ||||    
T  18374377 aaaatgagtatcgatttaatcaattgcaaacaaattaaagaataaaataaaatact 18374432  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 36106321 - 36106392
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgt 213  Q
    |||||| | ||||||||| ||| ||||   |||| || ||||||||||||||||||||||||| ||||||||    
T  36106321 ctccgttttaaaatgagtgtcgctttagcaaattgcatacatattaaggaatgaaataaagtagtcaaatgt 36106392  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 25332806 - 25332724
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| | ||||||||| ||| ||||   |||| || ||| ||||||||||  ||||||||| |||||||||||||||||||    
T  25332806 ctccgttttaaaatgagtgtcgctttagctaattgcacacagattaaggaattgaataaagtagtcaaatgtcatagcaattt 25332724  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 30855340 - 30855258
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||| ||||| ||  |||||||||||||  |||||| || ||||||||| || ||||||    
T  30855340 ctccgtttcaaaatgagtgtcgctttaaccaattgcacgcatattaaggaattgaataaaatagtcaaatgtcttaacaattt 30855258  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 43388575 - 43388657
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||| ||||||||||| ||| ||||  ||||| || ||| |||||| |||  ||||||||| |||||||||||| ||||||    
T  43388575 ctccgtttcaaaatgagtgtcgctttagccaattgcacacagattaagaaattgaataaagtagtcaaatgtcataacaattt 43388657  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 25383412 - 25383485
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||  ||||| ||  || ||||||||||| ||||||||| |||||| ||||||||||||    
T  25383412 aaaatgagtgtcgctttagccaattgcacgcaaattaaggaatggaataaagtagtcaaatatcatagcaattt 25383485  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 775796 - 775884
Alignment:
Q  136 tattctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||| | | ||||||| | ||| ||||  ||||| || ||| ||||||||||  ||||||||| |||||||||||| ||||||    
T  775796 tattctctcccttttaaaatgaatgtcgctttagccaattgcatacagattaaggaatagaataaagtagtcaaatgtcataacaattt 775884  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 12393875 - 12393919
Alignment:
Q  180 acatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||  |||||||||||||| | |||||||||||||||||    
T  12393875 acatattaaaaaatgaaataaagtagttaaatgtcatagcaattt 12393919  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 10520317 - 10520390
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||| |||||  | ||||||||||||||||||||||||| |||||||||||||||||||    
T  10520317 aaaatgagtgtcgctttaaccaattgtacacatattaaggaatgaaataaagtagtcaaatgtcatagcaattt 10520390  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 1135163 - 1135078
Alignment:
Q  139 tctctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||||||| ||| | | ||||  ||||| || ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  1135163 tctctccgtttcaaaataagtgttgctttagccaattgcacacatattaaggaatggaataaagtagtcaaatgtcatatcaattt 1135078  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 19675204 - 19675131
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||| ||||| |||||  | ||||||||||||||  ||||||||| |||||||||||||||||||    
T  19675204 aaaatgagtgtcgctttaaccaattgaacacatattaaggaattgaataaagtagtcaaatgtcatagcaattt 19675131  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 25932856 - 25932783
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||| ||||||||  |||||||| ||  |||||| |||||||||||||| | |||||||||||||||||    
T  25932856 aaaataagtgtcgttttagccaattacacaccgattaagaaatgaaataaagtagttaaatgtcatagcaattt 25932783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 26189733 - 26189664
Alignment:
Q  154 atgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaatt 223  Q
    |||||| ||| ||||  ||||| || |||| |||||||||||||||||||| | ||||||||||||||||    
T  26189733 atgagtgtcgctttagacaattgcacacatgttaaggaatgaaataaagtagttaaatgtcatagcaatt 26189664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 24163644 - 24163714
Alignment:
Q  155 tgagtatcgttttaatcaattacaaacata-ttaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||| ||||||||  ||||| || ||||| ||||| ||||||||||| || |||||||||||||||||||    
T  24163644 tgagtgtcgttttagccaattgcacacataattaagaaatgaaataaaatagtcaaatgtcatagcaattt 24163714  T

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Target: scaffold0078 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 1375 - 1448
Alignment:
Q  151 aaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||| ||  |||| |||||| || ||| ||||||||||||||||||||| |||||||||||||||||||    
T  1375 aaaatgagtgtcactttagtcaattgcacacagattaaggaatgaaataaagtagtcaaatgtcatagcaattt 1448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 62860 - 62786
Alignment:
Q  150 caaaatgagtatcgttttaatcaattacaaacatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    |||||||||| ||| ||||  ||||| || ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  62860 caaaatgagtgtcgctttagccaattgcacacatattaaggaatggaataaagtagtcaaatgtcataacaattt 62786  T

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Target: scaffold0565 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 9578 - 9630
Alignment:
Q  142 ctccgtatcaaaatgagtatcgttttaatcaattacaaacatattaaggaatg 194  Q
    |||||| ||||||||||| ||||||||  |||||||| |||||||||||||||    
T  9578 ctccgtttcaaaatgagtgtcgttttagccaattacacacatattaaggaatg 9630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 24696 - 24740
Alignment:
Q  180 acatattaaggaatgaaataaagtactcaaatgtcatagcaattt 224  Q
    ||||||||||||||| |||||| || |||||||||||||||||||    
T  24696 acatattaaggaatggaataaaatagtcaaatgtcatagcaattt 24740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 6287 - 6326
Alignment:
Q  184 attaaggaatgaaataaagtactcaaatgtcatagcaatt 223  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  6287 attaaggaatgaaataaagtagtcaaatgtcataacaatt 6326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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