View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8531_low_2 (Length: 525)
Name: NF8531_low_2
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8531_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 15 - 514
Target Start/End: Original strand, 29240366 - 29240860
Alignment:
| Q |
15 |
atcaacaacacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggtacatatctttatattctctattctc |
114 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29240366 |
atcaacaatacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtgatacatatctttatattctctattctc |
29240465 |
T |
|
| Q |
115 |
taacaatctgtagttttcaatctttaaatgtttactgtcaaactatgaattgccgtatttttgtaagtccacacaatctgatgttgaattttgtttctcg |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |
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| T |
29240466 |
taacaatctgtagttttcaatctttaaatgtttactgtcaaactatgaattgccgtatttttggatgtccacacaatctgatgttgaattccgtttctcg |
29240565 |
T |
|
| Q |
215 |
ttttactttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaattattacnnnnnnnnatttcaattttagagt |
314 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29240566 |
ttttgctttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaattattac-tttttttatttcaattttagagt |
29240664 |
T |
|
| Q |
315 |
tctattgaaaagcataacgtattgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttactagatagatagataggtggattctaatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29240665 |
tctattgaaaagcataacgtattgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttac----tagatagataggtggattctaatt |
29240760 |
T |
|
| Q |
415 |
tttatttcttcatatcttttaggcgaatgaaagtgctcgacaactagtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttctt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240761 |
tttatttcttcatatcttttaggcgaatgaaagtgctcgacagctggtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaagttctt |
29240860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 514
Target Start/End: Original strand, 16827902 - 16828403
Alignment:
| Q |
15 |
atcaacaacacaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggtacatatctttatattctctattctc |
114 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || | |
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| T |
16827902 |
atcaagaatacaaatcagagtatatttctacacaaaaaagagcttatttcagtgctcataaggatgaggagtggtacgtatctttatattctctgttata |
16828001 |
T |
|
| Q |
115 |
taacaatctgtagttttcaatctttaaatgtttactgtcaaactatgaattgccgtatttttgtaagtccacacaatctgatgttgaattttgtttctcg |
214 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |
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| T |
16828002 |
aaacagtctgtagttttcaatctttaaatgtttcctgtaaaactatgaattgccatatttttgtaagtccacacaatctgatgttgatttccctttctcg |
16828101 |
T |
|
| Q |
215 |
ttttactttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaattatta-----cnnnnnnnnatttcaatttt |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |
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| T |
16828102 |
ttttactttttatataggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggtaattcttattattattttttttatatcaatttt |
16828201 |
T |
|
| Q |
310 |
agagttctattgaaaagcataacgtattgtcctgctaatcttaatagatcatttttatttttgtgaggggttcttactagatagatagataggtggattc |
409 |
Q |
| |
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| |||||||||||||| |||||||| |||||||| |||||||||| |||||||||||||||| || ||||| ||||| | |||| |||||||||||| |
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| T |
16828202 |
acagttctattgaaaaacataacgtgttgtcctgttaatcttaatggatcatttttatttttatggggggtgcttac----tcgataaataggtggattc |
16828297 |
T |
|
| Q |
410 |
taatttttatttcttcatatcttttagg-cgaatgaaagtgctcgacaactagtaaaggattttttgcttgatttgcaaagtggaacattagatctgtaa |
508 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16828298 |
taatttttatttcttcatatattttaggaggaatgaaagtgctcgacagctggcaaaggattttttgcttgatttgcaaagtggaacattagatccgtaa |
16828397 |
T |
|
| Q |
509 |
gttctt |
514 |
Q |
| |
|
|||||| |
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|
| T |
16828398 |
gttctt |
16828403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 846427 - 846375
Alignment:
| Q |
229 |
taggttgaaagataaatatcatccaacaaatttgcttacagtcattgaaaggt |
281 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
846427 |
taggttgaaagataagtatcatccaacaaatttacttacagtaattgaaaggt |
846375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 501
Target Start/End: Complemental strand, 846199 - 846161
Alignment:
| Q |
463 |
aaaggattttttgcttgatttgcaaagtggaacattaga |
501 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||| |
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| T |
846199 |
aaaggagtttttgcttgatttgcaaagtggaacactaga |
846161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 846630 - 846564
Alignment:
| Q |
24 |
acaaatcagagtatatttctacacaaaaaagagcttatttcaatgctcataaggatgaggagtggta |
90 |
Q |
| |
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|||| |||||||||||| |||| |||||| |||||||||||||| | || ||||||| |||||||| |
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| T |
846630 |
acaagtcagagtatattactacccaaaaacgagcttatttcaatacccacaaggatgctgagtggta |
846564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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