View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8531_low_3 (Length: 511)

Name: NF8531_low_3
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8531_low_3
NF8531_low_3
[»] chr2 (4 HSPs)
chr2 (137-493)||(40084789-40085145)
chr2 (137-493)||(40058851-40059207)
chr2 (137-493)||(40076865-40077235)
chr2 (18-73)||(40077299-40077354)
[»] chr3 (2 HSPs)
chr3 (142-271)||(53322412-53322539)
chr3 (163-238)||(44352747-44352822)
[»] chr4 (3 HSPs)
chr4 (162-236)||(22016224-22016298)
chr4 (306-392)||(22016597-22016683)
chr4 (145-264)||(20005703-20005812)
[»] chr8 (1 HSPs)
chr8 (150-250)||(5450715-5450814)
[»] chr7 (2 HSPs)
chr7 (179-240)||(35052914-35052975)
chr7 (200-273)||(35052966-35053039)
[»] chr5 (2 HSPs)
chr5 (209-264)||(12735846-12735901)
chr5 (209-264)||(12798673-12798728)
[»] chr1 (1 HSPs)
chr1 (145-264)||(14124553-14124662)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 137 - 493
Target Start/End: Complemental strand, 40085145 - 40084789
Alignment:
Q  137 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085145 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 40085046  T
Q  237 taaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctggggagtactacgagggtagtgaata 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40085045 taaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaata 40084946  T
Q  337 gaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcagaa 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084945 gaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcagaa 40084846  T
Q  437 ccaacacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaa 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084845 ccaacacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaa 40084789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 137 - 493
Target Start/End: Complemental strand, 40059207 - 40058851
Alignment:
Q  137 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059207 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 40059108  T
Q  237 taaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctggggagtactacgagggtagtgaata 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40059107 taaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaata 40059008  T
Q  337 gaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcagaa 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  40059007 gaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgcaaaacatttttggtaggaaccaaagtagaa 40058908  T
Q  437 ccaacacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaa 493  Q
    ||||||||||||||  ||||||||||||||||||| | ||||||||||||| |||||    
T  40058907 ccaacacaatttcaaaggctctcatggtaattattttggaagaatgaatgaaccaaa 40058851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 137 - 493
Target Start/End: Complemental strand, 40077235 - 40076865
Alignment:
Q  137 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077235 cctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 40077136  T
Q  237 taaacaacaacaaattcagcactgtttaaattcaa--------------cacacaaacagaatcaaagagagacataaaataaaacctggggagtactac 322  Q
    |||||||||||||||||||||||||||||| ||||              | |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40077135 taaacaacaacaaattcagcactgtttaaaatcaaatacaatgcaaaaactcacaaacagaatcaaagagagacataaaataaaacctgtggagtactac 40077036  T
Q  323 gagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaa 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  40077035 gagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgcaaaacatttttggtag 40076936  T
Q  423 gaaccaaagcagaaccaacacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaa 493  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||||| | ||||||||||||| |||||    
T  40076935 gaaccaaagtagaaccaacacaatttcaaaggctctcatggtaattattttggaagaatgaatgaaccaaa 40076865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 40077354 - 40077299
Alignment:
Q  18 actaattctatctgcaatgcaaactttttctttcacacactaacataggaaatgct 73  Q
    |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||    
T  40077354 actaattctatctgcaattcaaactttttctttcacatattaacataggaaatgct 40077299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 53322539 - 53322412
Alignment:
Q  142 cctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaac 241  Q
    |||||||| |||| |||||||||||||||| ||||| |||  ||||||| || |||||||||| || |||| ||||| |||| ||||||||||||||| |    
T  53322539 cctttaactggtttatgtaagttccagaaa-catag-tttggatgacataaaatcctccatctatatatttttgaatgaggtttggccacatctataacc 53322442  T
Q  242 aacaacaaattcagcactgtttaaattcaa 271  Q
    ||||||||||||| ||| ||||||| ||||    
T  53322441 aacaacaaattcaacaccgtttaaaatcaa 53322412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 44352747 - 44352822
Alignment:
Q  163 ttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctata 238  Q
    ||||||||||||||||||||||||||||| | ||| || ||||| | | | ||||||||  | |||||||||||||    
T  44352747 ttccagaaaacataggtttcaatgacatctattccaccttcttttgctgtttgaataagagcaggccacatctata 44352822  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 22016224 - 22016298
Alignment:
Q  162 gttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 236  Q
    ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||||||    
T  22016224 gttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatcta 22016298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 392
Target Start/End: Original strand, 22016597 - 22016683
Alignment:
Q  306 aacctggggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcata 392  Q
    |||||| ||||| |||||||| || ||||| |||||||| || |  || || |||||||||||||||||||||||||||||||||||    
T  22016597 aacctgaggagtgctacgaggataatgaatggaaccagacataagaaccctgcgtttaccatcaatgaccaatgctctatgatcata 22016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 264
Target Start/End: Complemental strand, 20005812 - 20005703
Alignment:
Q  145 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 244  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  20005812 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 20005723  T
Q  245 aacaaattcagcactgttta 264  Q
    |||||||||| ||| |||||    
T  20005722 aacaaattcaacaccgttta 20005703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 5450814 - 5450715
Alignment:
Q  150 aggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaa 249  Q
    ||||||||||   ||||||||||||||||||| ||| ||||| | |||||| |||||||  ||||| ||||| |||||||||||||| ||||||||||||    
T  5450814 aggttcatgtccattccagaaaacataggtttgaatcacatccaatcctccttctttagccttctggataagatctggccacatcta-aaacaacaacaa 5450716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 35052914 - 35052975
Alignment:
Q  179 tttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaa 240  Q
    |||| ||||||| ||||||||||||| || |||| |||||||||| ||||||||||||||||    
T  35052914 tttcgatgacataaagtcctccatctataaatttttgaataaggtttggccacatctataaa 35052975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 35052966 - 35053039
Alignment:
Q  200 catctttagatttctgaataaggtctggccacatctataaacaacaacaaattcagcactgtttaaattcaaca 273  Q
    ||||| || |||| |||||||||| ||||||||||||||| |||| ||||||||| |||  |||||| ||||||    
T  35052966 catctataaatttttgaataaggtttggccacatctataaccaacgacaaattcaacaccttttaaaatcaaca 35053039  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 12735846 - 12735901
Alignment:
Q  209 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 264  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12735846 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12735901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 12798673 - 12798728
Alignment:
Q  209 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 264  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12798673 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12798728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 14124553 - 14124662
Alignment:
Q  145 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 244  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  14124553 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 14124642  T
Q  245 aacaaattcagcactgttta 264  Q
    |||||||||| ||| |||||    
T  14124643 aacaaattcaacaccgttta 14124662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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