View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8531_low_7 (Length: 364)
Name: NF8531_low_7
Description: NF8531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8531_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 45976051 - 45975699
Alignment:
| Q |
1 |
tgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataatatacacactcagaat |
100 |
Q |
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| T |
45976051 |
tgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataatatacacactcagaat |
45975952 |
T |
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| Q |
101 |
agcaacaacataataaggaaaaaagtga---ttatattgaagaatactactatatataccccatatttatggcaacaagttttcccagttgttcaacaaa |
197 |
Q |
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| T |
45975951 |
agcaacaacataataaggaaaaaagtgaagattatattgaagaatactactatatataccccatatttatggcaacaagttttcccagttgttcaacaaa |
45975852 |
T |
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| Q |
198 |
caccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcctatcgacaagcaccacctccata |
297 |
Q |
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| T |
45975851 |
caccaaggtgttctctgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcctatcgacaagcaccacctccata |
45975752 |
T |
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| Q |
298 |
gatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttctt |
350 |
Q |
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| T |
45975751 |
gatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttctt |
45975699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 28052383 - 28052450
Alignment:
| Q |
1 |
tgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaa |
68 |
Q |
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| T |
28052383 |
tgaaaattcctcaaccgcttactaaccatcttccaccttttttgcagatctccttgctccacagggaa |
28052450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 28052682 - 28052763
Alignment:
| Q |
169 |
gcaacaagttttcccagttgttcaacaaacaccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagta |
250 |
Q |
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|||||||||||||| || | |||||| | |||||||| ||||| |||| | ||||||||| ||||||||||| ||||||| |
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| T |
28052682 |
gcaacaagttttccaagcttttcaacgagcaccaaggcattctcagaagcagaatacaactcttgagctttatcttgaagta |
28052763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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