View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_high_1 (Length: 884)
Name: NF8532_high_1
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_high_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 783; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 783; E-Value: 0
Query Start/End: Original strand, 19 - 884
Target Start/End: Complemental strand, 26265578 - 26264710
Alignment:
| Q |
19 |
aacacatgtactggtgttgaacaccatacacgcccataatttgaagtgtcactgctacatatgaaggctctaaattacggttgcttatgttgtgattctt |
118 |
Q |
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| T |
26265578 |
aacacatgtactggtgttgaacaccatacacacccataatttgaagtgtcactgctacatatgaaggctctaaattacggttgcttatgttgtgattctt |
26265479 |
T |
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| Q |
119 |
gatattgggataaagttcggtctaacacgatcgatgtgtctgcaattgcagttgtggaggcctgcaaaacctataaattatagactgcactttaaaacca |
218 |
Q |
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| T |
26265478 |
gatattgggataaagttcggtctaacacgatcgatgtgtctgcaattgcagttgtggaagcctgcaaaacctataaattatagactgcactttaaaacca |
26265379 |
T |
|
| Q |
219 |
tgacaacaattgtggtcatgaaccttgataaagtactgtcatatgtgaccacagcacaattgcagtcgcgatgcagtggtaggggtctccaaaacctttt |
318 |
Q |
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| T |
26265378 |
tgacaacaattgtggtcatgaaccttgataaagtactgtcatatgtgaccacaacacaattgcagtcgcgatgcagtggtaggggtctccaaaacctttt |
26265279 |
T |
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| Q |
319 |
actgtaaactgcgctctaaaactatgacaataattgtagtcgtcatgatccttgatattgttgaaaattacagaaaaacacggccgatacaacctctatt |
418 |
Q |
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| T |
26265278 |
actgtaaactgcactctaaaactatgacaatagttgtagttgtcgtgatccttgatattgttgaaaattacagaaaaacacggccgatacaacctctatt |
26265179 |
T |
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| Q |
419 |
atagtcatg---tagttgtggagatctccaaaatctttatcttccgactatgacaacagtatacagagtacatataacgagacaagatacttacctcctc |
515 |
Q |
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| T |
26265178 |
atagtcatgatgtagttgtggagatctccaaaatcttgatcttcagactatgacaacaatatatggagtacatataacgagacaagatacttacctcctc |
26265079 |
T |
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| Q |
516 |
tatcctttgccttagtgcattgaagctctttttgctgattgctctataagtgcctccaaatgttactgaatcaggaatgagttcgtgagcagactctgaa |
615 |
Q |
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| T |
26265078 |
tatcctttgccttagtgcattgaagctctttttgcttattgctctataagtgcctccaaatgttactgaatcaggaatgagttcgtgagcagactctgaa |
26264979 |
T |
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| Q |
616 |
tgtaccattgccacagaaactacctgcagaatttagcttcatatgtaaataattttacagcactcaaatcaaaaacataatgactcataagaaataatgt |
715 |
Q |
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| T |
26264978 |
tgtaccattgccacagaaactacctgcagaacttagcttcatatgtaaatatttttacagcactcaaatcacaaacataatgactcataagaaataatgt |
26264879 |
T |
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| Q |
716 |
gtgaaaacttggtcttgcaattttttagtgtttgactcaacctgggaatctaaaggatccacctcccttgaaacaatgttttgcaagctaatcaccgaca |
815 |
Q |
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| T |
26264878 |
gtgaaaacttggtcttgcaatattttagtgtttgactcaacctgggaatctaaaggatccacctcccttgaaacaatgttttgcaagctaatcaccgaca |
26264779 |
T |
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| Q |
816 |
ttgaagcggccaaaacaggatcaagacaatgctgcggaatttccgctaaaccccctttgatctctgctt |
884 |
Q |
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| T |
26264778 |
ttgaagcggccaaaacaggatcaagacaatgctgcggaatttccgctaaaccccctttgatctttgctt |
26264710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 506 - 878
Target Start/End: Original strand, 31838014 - 31838405
Alignment:
| Q |
506 |
ttacctcctctatcctttgccttagtgcattgaagctctttttgctgattgctctataagtgcctccaaatgttactgaatcaggaatgagttcgtgagc |
605 |
Q |
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| T |
31838014 |
ttacctcttctatcctattccttagtgcattgaagctctttttgctgaatgctctataagtacctccaaatgttacagaatcaggggtgagttcatgacc |
31838113 |
T |
|
| Q |
606 |
agactctgaatgtaccattgccacagaaactacctgcagaatttagcttcatat-gtaaataattttacagcactcaaatcaaaaacataatgactcata |
704 |
Q |
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| T |
31838114 |
agactctgattggatcattgccacagaaagcacctgcaaaattaagctttatatattaacttcttatacaacactcaagccacaaacagaatcaatcata |
31838213 |
T |
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| Q |
705 |
agaaataatgtgtgaaaac-ttggtcttgcaatt-----------------ttttagtgtttgactcaacctgggaatctaaaggatccacctcccttga |
786 |
Q |
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| T |
31838214 |
agaattaatgtgttaaaacttttatcttgtaagtttctttttgtaattgaatttcagtgtttgactccacctgcgagtctaaaggatccacctcccttga |
31838313 |
T |
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| Q |
787 |
aacaatgttttgcaagctaatcaccgacattgaagcggccaaaacaggatcaagacaatgctgcggaatttccgctaaaccccctttgatct |
878 |
Q |
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| T |
31838314 |
aataatgttttgcaagctaatcacggatgccgaagcagccaaaattggatcaagacaacgctgcggagttcctgctaaaccccctttgatct |
31838405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 31837568 - 31837641
Alignment:
| Q |
97 |
ggttgcttatgttgtgattcttgatattgggataaagttcggtctaacacgatcgatgtgtctgcaattgcagt |
170 |
Q |
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| T |
31837568 |
ggttgattttgttgtgattcttgatatcgtgaaaaagcacggtcaaatgcgatcgatgtggctgcaattgcagt |
31837641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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