View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_low_12 (Length: 267)
Name: NF8532_low_12
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 325248 - 325460
Alignment:
| Q |
11 |
cagagaagaaaaagtatcctatcggagccgaacattatcaactttacgaagagattggtcaaggcgttagtgcttccgttcatcgcgctctctgtgtttc |
110 |
Q |
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| T |
325248 |
cagagaagaaaaagtatcctatcggagccgaacattatcaactttacgaagagattggtcaaggcgttagtgcttccgttcatcgcgctctctgtgtttc |
325347 |
T |
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| Q |
111 |
tttcaatgaaatcgtcgccatcaaaattctcgacttcgaacgcgacaactgcgatctggtaccttattttttcattcatattaatattttaattctaaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325348 |
tttcaatgaaatcgtcgccatcaaaattctcgacttcgaacgcgacaactgcgatctggtaccttattttttcattcatattaatattttaattctaaat |
325447 |
T |
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| Q |
211 |
tgctttcgccacg |
223 |
Q |
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||||||||||||| |
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| T |
325448 |
tgctttcgccacg |
325460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 251
Target Start/End: Original strand, 325470 - 325500
Alignment:
| Q |
221 |
acgctgcaaacttctacattgcctatgcatc |
251 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
325470 |
acgctgcaaacttctacattgcctatgcatc |
325500 |
T |
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