View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_low_14 (Length: 264)
Name: NF8532_low_14
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_low_14 |
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| [»] chr5 (12 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 39726888 - 39726625
Alignment:
| Q |
1 |
aaatgaaaagcatgttccttgtgtgtggttgttattattggaacaaccaaatcatcaacaaaggtgatttttgtttaagctagtaactagctagatcatc |
100 |
Q |
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||||||||||||| ||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726888 |
aaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagctagtaactagctagatcatc |
39726789 |
T |
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| Q |
101 |
cgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726788 |
cgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgctgt |
39726689 |
T |
|
| Q |
201 |
tatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726688 |
tatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcc |
39726625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 264
Target Start/End: Complemental strand, 38988138 - 38987906
Alignment:
| Q |
28 |
gttgttattattggaacaaccaaatcatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatggatcaa |
127 |
Q |
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|||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
38988138 |
gttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtgactag----atcatccgtcaagcaagtcctccaatggatcaa |
38988043 |
T |
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| Q |
128 |
aaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgctgttatcttgaagagtagttgagggtcttg |
227 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38988042 |
aaggtctggtaggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgctgttatcttgaagagtagttgagggtcttg |
38987943 |
T |
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| Q |
228 |
ttgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38987942 |
ttgtagatcattgaagaagagttgataatcagattcc |
38987906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 40418715 - 40418484
Alignment:
| Q |
29 |
ttgttattattggaacaaccaaatcatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatggatcaaa |
128 |
Q |
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||||| |||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
40418715 |
ttgttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagtaactag----atcatccgtcaagcaagtcctccaatggaacaaa |
40418620 |
T |
|
| Q |
129 |
aggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgctgttatcttgaagagtagttgagggtcttgt |
228 |
Q |
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||||||| |||||||| |||||||||||| |||||||||||| ||| || ||| |||||||| |||| ||| |||||||| |||| || ||||||| |
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| T |
40418619 |
aggtctggtaggggggattacgaagggcccatcatatgtgtagcttttggtttgatctcggtaggctgctcttacgttgaagaggagtttagtgtcttgt |
40418520 |
T |
|
| Q |
229 |
tgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
40418519 |
tgtagatcattgaagaagagttgataatcagattcc |
40418484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 39880279 - 39880021
Alignment:
| Q |
1 |
aaatgaaaagcatgttccttgtgtgtggttgttattattggaacaaccaaatcatcaacaaaggtgatttttgtttaagctagtaactagctagatcatc |
100 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
39880279 |
aaatgaaaagcatcttccttgattgttgttgttattattggaacaaaaaaa-catcaacaaaagtgatttttgtttaagctagtaactag----atcatc |
39880185 |
T |
|
| Q |
101 |
cgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgctgt |
200 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||| | ||||||||| |||||||||||| ||| || ||| |||||||| |||| | |
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| T |
39880184 |
cgtcaagcaagtcctccaatggaaaaaaaggtctggtaggggggattctgaagggcccatcatatgtgtagcttttggtttgatctcggtaggctgctct |
39880085 |
T |
|
| Q |
201 |
tatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
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|| |||||| |||| || || |||||||||||||||||||||||||||||||||||||||| |
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| T |
39880084 |
tacgctgaagatgagtttagtgttttgttgtagatcattgaagaagagttgataatcagattcc |
39880021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 1163549 - 1163606
Alignment:
| Q |
207 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
| |
|
|||||| |||| |||||||||||||||||| || ||||||||||||||| |||||||| |
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| T |
1163549 |
gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcc |
1163606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 1850190 - 1850133
Alignment:
| Q |
207 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
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|||||| |||| |||||||||||||| ||| || |||||||||||||||||||||||| |
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| T |
1850190 |
gaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcc |
1850133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 3299779 - 3299722
Alignment:
| Q |
207 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
| |
|
|||||| |||| || ||||||||||||||| || |||||||||||||||||||||||| |
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| T |
3299779 |
gaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcc |
3299722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 3392672 - 3392615
Alignment:
| Q |
207 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
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|
|||||| |||| || ||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
3392672 |
gaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcc |
3392615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 1850290 - 1850248
Alignment:
| Q |
92 |
tagatcatccgtcaagcaagtcctccaatggatcaaaaggtct |
134 |
Q |
| |
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|||||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
1850290 |
tagatcatccatcaagcaaatcctccaatggataaaaaggtct |
1850248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 39169098 - 39169056
Alignment:
| Q |
222 |
gtcttgttgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
| |
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||||||||||||||| || || ||||||||||||||||||||| |
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| T |
39169098 |
gtcttgttgtagatcttttaaaaagagttgataatcagattcc |
39169056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 3299892 - 3299852
Alignment:
| Q |
94 |
gatcatccgtcaagcaagtcctccaatggatcaaaaggtct |
134 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
3299892 |
gatcatccatcaagcaaatcctccaatggataaaaaggtct |
3299852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 3392785 - 3392745
Alignment:
| Q |
94 |
gatcatccgtcaagcaagtcctccaatggatcaaaaggtct |
134 |
Q |
| |
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|||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
3392785 |
gatcatccatcaagcaaatcctccaatggataaaaaggtct |
3392745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 25911917 - 25912172
Alignment:
| Q |
1 |
aaatgaaaagcatgttccttgtgtgtggttgttattattggaacaaccaaatcatcaacaaaggtgatttttgtttaagctagtaactagctagatcatc |
100 |
Q |
| |
|
||||| |||||| ||||||| ||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
25911917 |
aaatgtaaagcaccttccttgattgttgttgttattattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactag----atcatc |
25912012 |
T |
|
| Q |
101 |
cgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgctgt |
200 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||| ||| || ||| || || |||| | |
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| T |
25912013 |
cgtcaagcaagtcctccaatggaacaaaaggtctggtaggggggactacgaagggcccaacatatgtgtagcttttggtttgatctc----ggctgctct |
25912108 |
T |
|
| Q |
201 |
tatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcc |
264 |
Q |
| |
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|| ||||||| |||| ||||||||| ||||||| ||| |||||||||||||||||||||||| |
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|
| T |
25912109 |
tacgttgaagatcagtttagggtcttgctgtagataatttaagaagagttgataatcagattcc |
25912172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 44444444 - 44444535
Alignment:
| Q |
35 |
ttattggaacaaccaaatcatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatggatcaaaag |
130 |
Q |
| |
|
|||||||| || |||| |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||||| |
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| T |
44444444 |
ttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgtaa----ctagatcatccgtcaagcaagtcctctaatggaacaaaag |
44444535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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