View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8532_low_15 (Length: 259)

Name: NF8532_low_15
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8532_low_15
NF8532_low_15
[»] chr7 (1 HSPs)
chr7 (20-241)||(38631895-38632116)
[»] chr1 (19 HSPs)
chr1 (22-182)||(35224926-35225086)
chr1 (74-184)||(34309414-34309524)
chr1 (74-156)||(35212031-35212113)
chr1 (86-196)||(19267688-19267798)
chr1 (87-184)||(35263089-35263186)
chr1 (75-156)||(45525533-45525611)
chr1 (77-152)||(45531633-45531708)
chr1 (80-170)||(35295863-35295953)
chr1 (99-184)||(35190453-35190538)
chr1 (87-183)||(35270514-35270610)
chr1 (22-156)||(8638911-8639048)
chr1 (114-184)||(35276639-35276709)
chr1 (80-233)||(19266324-19266477)
chr1 (124-184)||(35147470-35147530)
chr1 (22-156)||(35219074-35219211)
chr1 (80-162)||(35194564-35194646)
chr1 (122-177)||(35476415-35476470)
chr1 (114-184)||(35200037-35200107)
chr1 (120-184)||(35248381-35248445)
[»] chr3 (3 HSPs)
chr3 (79-184)||(19246963-19247068)
chr3 (79-184)||(17664560-17664665)
chr3 (74-162)||(899768-899856)
[»] chr2 (1 HSPs)
chr2 (82-185)||(33138611-33138714)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 38631895 - 38632116
Alignment:
Q  20 gtcctaacttctattccttcaacaaagaagcctctcttcaaatacgcaccatgcttctcgataacactcatctggatttcttcatctttaaggtctgaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38631895 gtcctaacttctattccttcaacaaagaagcctctcttcaaatacgcaccatgcttctcgataacactcatctggatttcttcatctttaaggtctgaag 38631994  T
Q  120 tgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatccttttatgttgttgaatcgcatacctctcacatatgg 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38631995 tgaagaactctcccatatgaatctccaaccacccatcgtttcttacactagcacgtcgcaatccttttatgttgttgaatcgcatacctctcacatatgg 38632094  T
Q  220 atctaaacagccaacattagta 241  Q
    ||| ||||||||||| ||||||    
T  38632095 atccaaacagccaacgttagta 38632116  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 35224926 - 35225086
Alignment:
Q  22 cctaacttctattccttcaacaaagaagcctctcttcaaatacgcaccatgcttctcgataacactcatctggatttcttcatctttaaggtctgaagtg 121  Q
    ||||||||||||||||||||||||||| ||||||||| |||   |||| |   | || ||||||||||| |||| |||||||||||  ||| ||||| ||    
T  35224926 cctaacttctattccttcaacaaagaaacctctcttccaatgaccaccctttatatcaataacactcatttggacttcttcatcttctaggcctgaaatg 35225025  T
Q  122 aagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatc 182  Q
    |||||||||||||||| |||||| ||||| |||||| |||| ||| ||| |||| ||||||    
T  35225026 aagaactctcccatctcaatctctaaccagccatcgcttctcacattaggacgttgcaatc 35225086  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 34309414 - 34309524
Alignment:
Q  74 ttctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcac 173  Q
    ||||||| ||| ||||| |||||||||||||||| ||||  |||| |||||||||||||||||| |||||||||||| |||||  |||||||| ||| ||    
T  34309414 ttctcgacaacgctcatttggatttcttcatcttcaaggcttgaattgaagaactctcccatctcaatctccaaccatccatcacttcttacattaggac 34309513  T
Q  174 gtcgcaatcct 184  Q
    || ||||||||    
T  34309514 gttgcaatcct 34309524  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 35212031 - 35212113
Alignment:
Q  74 ttctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatc 156  Q
    ||||||| ||||||||| |||||||||||||||| ||||   ||| |||||||||||||||||| ||||||||||||||||||    
T  35212031 ttctcgacaacactcatttggatttcttcatcttcaaggctagaattgaagaactctcccatctcaatctccaaccacccatc 35212113  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 19267798 - 19267688
Alignment:
Q  86 ctcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcctt 185  Q
    ||||| |||| ||||||  |||||||| ||||| ||||||| ||||| || ||||| ||||||||||| |||||||| ||||||||| ||| ||||||||    
T  19267798 ctcatatggaattcttctactttaaggcctgaaatgaagaaatctccgatttgaatttccaaccacccgtcgtttctcacactagcatgtcacaatcctt 19267699  T
Q  186 ttatgttgttg 196  Q
     | ||||||||    
T  19267698 ctttgttgttg 19267688  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 35263089 - 35263186
Alignment:
Q  87 tcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcct 184  Q
    ||||||||| |||||||| ||  | | ||||| |||||||||| ||||||| ||||||||||||||||||| |||| ||||||| |||| ||||||||    
T  35263089 tcatctggacttcttcattttctatgcctgaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcct 35263186  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 45525533 - 45525611
Alignment:
Q  75 tctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatc 156  Q
    ||||||||||||||||||||| |||||||| || |||| ||||| |   |||||||||||||| ||||||||||||||||||    
T  45525533 tctcgataacactcatctggacttcttcattttcaaggcctgaatt---gaactctcccatctcaatctccaaccacccatc 45525611  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 45531633 - 45531708
Alignment:
Q  77 tcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacc 152  Q
    |||||||||||||| |||| |||||||| || |||| ||||| |||||||||||||||||| ||||||| ||||||    
T  45531633 tcgataacactcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacc 45531708  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 35295953 - 35295863
Alignment:
Q  80 ataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactag 170  Q
    ||||||||||| |||| ||||||||||   | | ||||| |||||||||||||||||| ||||||||||||||||||  |||| |||||||    
T  35295953 ataacactcatttggacttcttcatctactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactag 35295863  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 35190453 - 35190538
Alignment:
Q  99 cttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcct 184  Q
    |||||||||  ||| ||||| ||||||||||||| |||| ||||||||||||||||||  |||| ||||||| |||| ||||||||    
T  35190453 cttcatcttctaggcctgaattgaagaactctccgatctcaatctccaaccacccatcacttctcacactaggacgttgcaatcct 35190538  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 35270514 - 35270610
Alignment:
Q  87 tcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcc 183  Q
    ||||||||| |||||||| ||  | | ||||| |||||||||| ||||||| ||||||||||||||||||  |||| ||||||| |||| |||||||    
T  35270514 tcatctggacttcttcattttctatgcctgaattgaagaactcccccatctcaatctccaaccacccatcacttctcacactaggacgttgcaatcc 35270610  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 8638911 - 8639048
Alignment:
Q  22 cctaacttctattccttcaacaaagaagcctctcttcaaatacgcaccatgctt---ctcgataacactcatctggatttcttcatctttaaggtctgaa 118  Q
    ||||||||||||||||||||||||||| ||||||||| ||     ||||| |||   | |  ||| |||||| |||| |||||||||||  | | |||||    
T  8638911 cctaacttctattccttcaacaaagaaacctctcttccaagtataaccatcctttatcccagtaatactcatttggacttcttcatcttctaagcctgaa 8639010  T
Q  119 gtgaagaactctcccatctgaatctccaaccacccatc 156  Q
     |||||||||||||||||| | ||||||||||||||||    
T  8639011 ttgaagaactctcccatctcagtctccaaccacccatc 8639048  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 35276639 - 35276709
Alignment:
Q  114 ctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcct 184  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||  |||| ||||||| |||| ||||||||    
T  35276639 ctgaattgaagaactcccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcct 35276709  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 19266324 - 19266477
Alignment:
Q  80 ataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgca 179  Q
    |||| |||||| |||| ||| ||  ||||||||  |||| ||||||| ||||  |||  ||||||| || ||||||||| ||| || |||||| ||| ||    
T  19266324 ataaaactcatatggacttcgtccactttaaggagtgaaatgaagaaatctcttatcccaatctcctacaacccatcgtatctcaccctagcatgtcaca 19266423  T
Q  180 atccttttatgttgttgaatcgcatacctctcacatatggatctaaacagccaa 233  Q
    | |||| | |||||||| ||  | |||||||||||||||| |||||||||||||    
T  19266424 acccttctttgttgttgtatttcctacctctcacatatggttctaaacagccaa 19266477  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 35147470 - 35147530
Alignment:
Q  124 gaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcct 184  Q
    |||||| ||||||| ||||||||||||||||||| |||| ||||||| |||| ||||||||    
T  35147470 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcct 35147530  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 35219074 - 35219211
Alignment:
Q  22 cctaacttctattccttcaacaaagaagcctctcttcaaatacgcaccatgct---tctcgataacactcatctggatttcttcatctttaaggtctgaa 118  Q
    ||||||||||||||||||||||||||| ||||||||| ||||   ||||| ||   || |  ||| |||||| |||| ||||||||||   | | |||||    
T  35219074 cctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatcccagtaatactcatttggacttcttcatctggtaagcctgaa 35219173  T
Q  119 gtgaagaactctcccatctgaatctccaaccacccatc 156  Q
     |||||||||||||||||| | | ||||||||| ||||    
T  35219174 atgaagaactctcccatctcagtttccaaccactcatc 35219211  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 35194564 - 35194646
Alignment:
Q  80 ataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttct 162  Q
    ||||||||||| || | ||||||||||| ||||  || | |||||||||| ||||| | ||||||||||||||||||| ||||    
T  35194564 ataacactcatttgcacttcttcatcttcaaggcttggattgaagaactcccccatttcaatctccaaccacccatcgcttct 35194646  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 35476415 - 35476470
Alignment:
Q  122 aagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcg 177  Q
    |||||||||||||||| ||||||||||||||||||   ||| ||||||| ||||||    
T  35476415 aagaactctcccatctcaatctccaaccacccatcacgtctcacactaggacgtcg 35476470  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 35200037 - 35200107
Alignment:
Q  114 ctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcct 184  Q
    ||||| |||||||||| || || | ||||||||||||||||||| |||| |||||||  ||| ||||||||    
T  35200037 ctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacactagggcgttgcaatcct 35200107  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 35248381 - 35248445
Alignment:
Q  120 tgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcct 184  Q
    |||||||||| ||||||| |||||| |||||||||||| |||| ||| ||| || | ||||||||    
T  35248381 tgaagaactcccccatctcaatctcaaaccacccatcgcttctcacaatagaactttgcaatcct 35248445  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 19247068 - 19246963
Alignment:
Q  79 gataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgc 178  Q
    |||||||||||| ||||||||||||||||| |||  |||| | ||||| |||||||||| |||||||||||| |||||   ||| ||||||| |||| ||    
T  19247068 gataacactcatgtggatttcttcatctttgaggcttgaattaaagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttgc 19246969  T
Q  179 aatcct 184  Q
    ||||||    
T  19246968 aatcct 19246963  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 17664665 - 17664560
Alignment:
Q  79 gataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgc 178  Q
    |||||||||||| |||| |||||||||||| |||  |||| | ||||| |||||||||| |||||||||||| |||||   ||| ||||||| |||| ||    
T  17664665 gataacactcatgtggacttcttcatctttgaggcttgaattaaagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttgc 17664566  T
Q  179 aatcct 184  Q
    ||||||    
T  17664565 aatcct 17664560  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 899856 - 899768
Alignment:
Q  74 ttctcgataacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttct 162  Q
    ||||||| ||||||||| |||| ||||||  ||| |||   |||| |||| ||||||||||||| ||||||||||||||||||| ||||    
T  899856 ttctcgacaacactcatttggacttcttctccttcaagtcttgaattgaataactctcccatctcaatctccaaccacccatcgcttct 899768  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 33138714 - 33138611
Alignment:
Q  82 aacactcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatctgaatctccaaccacccatcgtttcttacactagcacgtcgcaat 181  Q
    |||||||||  ||| ||||||||||||| ||  |||| ||||||| | |||||||| ||||||||||||||||||  |||| ||| ||| |||  |||||    
T  33138714 aacactcatacggacttcttcatctttagggcttgaattgaagaattttcccatctcaatctccaaccacccatcacttctcacagtaggacgctgcaat 33138615  T
Q  182 cctt 185  Q
    ||||    
T  33138614 cctt 33138611  T

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