View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_low_17 (Length: 240)
Name: NF8532_low_17
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 44532771 - 44532978
Alignment:
| Q |
16 |
agaaggtagaagtgggaaatcagaaggaaaaacctatagattttttgatcaattacaagcacttgaaaaacaactcacattctcctcttaccatccaaaa |
115 |
Q |
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| T |
44532771 |
agaaggtagaagtgggaaatcagaaggaaaaacctatagattttttgatcaattacaagcacttgaaaaacaactcacattctcctcttaccatccaaaa |
44532870 |
T |
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| Q |
116 |
ccacaaacaaataataacacaccaacaacaaatcccattgaaaccacacgagcaatatcatatgtcacaaccactgttccatccacaaaccctaccacat |
215 |
Q |
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| T |
44532871 |
ccacaaacaaataataacacaccaacaacaaatcccattgaaaccacacaagcaatatcatatgtcacaaccactgttccatccacaaaccctaccacat |
44532970 |
T |
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| Q |
216 |
tcatttct |
223 |
Q |
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|||||||| |
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| T |
44532971 |
tcatttct |
44532978 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 12682116 - 12682193
Alignment:
| Q |
7 |
gagaagcagagaaggtagaagtgggaaatcagaaggaaaaacctatagattttttgatcaattacaagcacttgaaaa |
84 |
Q |
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||||| || |||||| ||| |||| |||||||| || ||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
12682116 |
gagaaccaaagaaggaagaggtggtaaatcagatggtaaaacttatagattctttgatcaattacaagcccttgaaaa |
12682193 |
T |
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