View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_low_3 (Length: 439)
Name: NF8532_low_3
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 31 - 424
Target Start/End: Complemental strand, 51755719 - 51755328
Alignment:
| Q |
31 |
cggtcggtgtcttgcttgtgttcaacaacagtatgtatccgattctgggcacggcttcaatttaatgtatcggtgctacataggtcaaccgtcaacacac |
130 |
Q |
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| T |
51755719 |
cggtcggtgtcttgcttgtgttcaacaacagtatgtatccgattctgggcacggcttcaatttaatgtatcggtgctacataggtcagccgtcaacacac |
51755620 |
T |
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| Q |
131 |
aatgtcaatagccagccttaggccaactgccagattttagtttctgacccatttctagtttctgcctaacacaatttcacgttccataacctctatactt |
230 |
Q |
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| T |
51755619 |
aatgtcaatagccagccttaggccaactgccagattttagtttctgacccatttctagtttctgccaaacacaatttcacgttccataacctctatactt |
51755520 |
T |
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| Q |
231 |
accatagccctgttatacagttcactgtatgatatgatatatatactttgtcttgtagaacaagaaatgcaaggcctccctttgaaaacaaggtccattt |
330 |
Q |
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| T |
51755519 |
accatagccctgttatacagttcactgtatgatatgata--tatactttgtcttgtagaacaagaaatgcaaggcctccctttgaaaacaaggtccattt |
51755422 |
T |
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| Q |
331 |
ggaaaatacaaatttagggaacataaaagcgtttatatcagaattactgacttgagaaatctcatgaaattttcattgcagtaaatagtataat |
424 |
Q |
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| T |
51755421 |
ggaaaatacaaatttagggaacataaaagcgtttatatcagaattactgacttgagaaatctcatgaaattttcattgcagtaaatagtataat |
51755328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 51767455 - 51767276
Alignment:
| Q |
34 |
tcggtgtcttgcttgtgttcaacaacagtatgtatccgattctgggcacggcttcaatttaatgtatcggtgctacataggtcaaccgtcaacacacaat |
133 |
Q |
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| T |
51767455 |
tcggtgtcatgcttgtgtcgaacaacaatatgtatccaactctaaacatgccttcaatctaaagtgtccgtgctacataggtcagtcgtcaatgcacaaa |
51767356 |
T |
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| Q |
134 |
gtcaatagccagccttaggccaactgccagattttagtttctgacccatttctagtttctgcctaacacaatttcacgttccataac |
220 |
Q |
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| T |
51767355 |
gtcaatagctggcctcaggcca-------gattttaatttctgatccatttctagcttctgccaaacacaatttcacgttcaataac |
51767276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 51767219 - 51767175
Alignment:
| Q |
297 |
atgcaaggcctccctttgaaaacaaggtccatttggaaaatacaa |
341 |
Q |
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| T |
51767219 |
atgcatggcctccctctaaaaacatggtccatttggaaaatacaa |
51767175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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