View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_low_4 (Length: 434)
Name: NF8532_low_4
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 39229521 - 39229931
Alignment:
| Q |
1 |
cgtttcaatatcactaaaagggtatccaggtaagttcaatttcatagcaatttcgcaataaaatcacgctgtagnnnnnnnnttatcgcttttctctaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39229521 |
cgtttcaatatcactaaaagggtatccaggtaagttcaatttcatagcactttcgcaataaaatcacgctgtagaaaaaaaattatcgcttttctctaat |
39229620 |
T |
|
| Q |
101 |
gctattttttctcttgagcagaagtacatgcagctcttgcagcagctttatatgcagataagcatgctgcgttgcttgctgaaaaccagtttacaattgc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39229621 |
gctattttttctcttgagcagaagtacatgcagctcttgcagcagccttatatgcagataagcatgctgcgttgcttgctgaaaaccagtttacaattgc |
39229720 |
T |
|
| Q |
201 |
aactcttcttgatcctcattttacagatctttcatatgttagagacacaaagcactggcctccaagtttgattagttctctgcagcatttcattacacta |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39229721 |
aactcttcttgatcctcattttacagatctttcatatgttagagacacaaagcactggcctccgagtttgattagttctctgcagcatttcattacacta |
39229820 |
T |
|
| Q |
301 |
tcttaagaccttacattatatttatacgttttgtttaacacatactttagcagttatatgaaaactttctcaggtttggacctttattacaacttcaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39229821 |
tcttaagaccttacattatatttatacgttttgtttaacacatactttagcagttatatgaaaactttctcaggtttggacctttattacaacttcaaat |
39229920 |
T |
|
| Q |
401 |
gtatacccttg |
411 |
Q |
| |
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||||||||||| |
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|
| T |
39229921 |
gtatacccttg |
39229931 |
T |
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