View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_low_5 (Length: 378)
Name: NF8532_low_5
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 371
Target Start/End: Original strand, 39310751 - 39311102
Alignment:
| Q |
20 |
ctttgcatatctgcaaatcacaaagtctattcagtaaggttgacacatgggttcgtgaagcatataaacaaatgatatgttactcttactgtaaaagaga |
119 |
Q |
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| T |
39310751 |
ctttgcatatctgcaaatcacaaagtctattcagcaaggttgacacatgggttcgtgaagcatataaacaaatgatatgttactcttactgtaaagaaga |
39310850 |
T |
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| Q |
120 |
tgaattcaacttgtttactgattctcagtagtaacaagaattgtgttcaacagataaaattacgacgagcaagtaactttgtcctccaattgatattctt |
219 |
Q |
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| T |
39310851 |
tgaattcaacttgtttactgattctcagtagtaacaagaattgtgttcaacagataaaattacgatgagcaagtaactttgccctccaattcatattctt |
39310950 |
T |
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| Q |
220 |
gagtacatgagagttgtttactcaataataagaacttatacaaatatatttacgcatccaaaacatacctagaaattaaaaagtcaataacatgcaatga |
319 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39310951 |
gagtacatgagagttgtttactcaataataagaaattatacaaatatatttacgcatccaaaacatacctagaaattaaaaagtcaataacatgtaatga |
39311050 |
T |
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| Q |
320 |
ctttgaaatgtaatctggagaagttggccagcctgtaaatccatctctgctt |
371 |
Q |
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| T |
39311051 |
ctttgaaatgtaatctggagaagttggccagcctgtaaatccatctctgctt |
39311102 |
T |
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