View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_low_6 (Length: 375)
Name: NF8532_low_6
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 34023015 - 34022802
Alignment:
| Q |
1 |
gaaccgtggcgcttagcttcatcataacctatcattcttgctaccgctcctccactttcagtcagaccatatccctataagtaaacaatacatcaatnnn |
100 |
Q |
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| T |
34023015 |
gaaccgtggcgcttagcttcatcataacctatcattcttgctaccgctcctccactttcagtcagaccatatccctataagtaaacaatacatcaataaa |
34022916 |
T |
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| Q |
101 |
nnnnncaaacaaataaaaggatatatttgattgagctaggacatatggttatcggagaatgagttggtttgcaagaaaattataccagattgaaatgaat |
200 |
Q |
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| T |
34022915 |
aaaa-caaacaaataaaagaatatatttgattgagctaggacatatggttatcggagaatgagttggtttgcaagaaaattataccagattgaaatgaat |
34022817 |
T |
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| Q |
201 |
ctttattcaacttta |
215 |
Q |
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||||||||||||||| |
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| T |
34022816 |
ctttattcaacttta |
34022802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 34030268 - 34030173
Alignment:
| Q |
1 |
gaaccgtggcgcttagcttcatcataacctatcattcttgctaccgctcctccactttcagtcagaccatatccctataagtaaacaatacatcaat |
97 |
Q |
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| T |
34030268 |
gaaccgtggcgcttagcttcatcaaaacctatcattcttgctgcccctcctccactttcagtcagaccatatccctaaaagt-aacagtacatcaat |
34030173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 34022175 - 34022088
Alignment:
| Q |
270 |
taagctctaatctacgaaactctgaatattcaacctaatgattttagcatttaacaattgaattatgactgagtggtacgatgcaatt |
357 |
Q |
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|||| |||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34022175 |
taagttctaatctacgacactctgaatattcaacctaacgactttagcatttaacaattgaattatgactcagtggtacgatgcaatt |
34022088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 34022502 - 34022445
Alignment:
| Q |
214 |
tattatatacaggcggagtggtaaataccactcaaactcacataaatgaaagatttta |
271 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34022502 |
tattatataccggaggagtggtaaataccactcaaactcacataaatgaaagatttta |
34022445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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