View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_low_7 (Length: 354)
Name: NF8532_low_7
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 120 - 339
Target Start/End: Complemental strand, 33061082 - 33060852
Alignment:
| Q |
120 |
attagttgagtacattgacaaggaacacgttaaatctactcgagcccaaagagattaatgttgcacacattctttctttttaagagtagaaaaa------ |
213 |
Q |
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| T |
33061082 |
attagttgagtacattgacaagaaacacgttaaatctactcgagcccaaagagattaatgttgcacacattctttctttttaagagtagaaaaactgcat |
33060983 |
T |
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| Q |
214 |
-----gctgatactggttagagattctgctgataaccccgccgtcttatgttgtgtgactttgttgatactttaacaactgtattttcaagctgttcttg |
308 |
Q |
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| T |
33060982 |
cgatagctgatactggttagagattctgctgataaccccgccgtcttatgttgtgtgactttgttgatactttaacaactgtattttcaagctgttcttg |
33060883 |
T |
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| Q |
309 |
aaattttagcaagcacgcacacttgcaaaat |
339 |
Q |
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| T |
33060882 |
aaattttagcaagcacacacacttgcaaaat |
33060852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 33061264 - 33061215
Alignment:
| Q |
11 |
cagagagattgggaggtgtgagtgagcatttgatgtgtgagatgtgagag |
60 |
Q |
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| T |
33061264 |
cagagagattgggaggtgtgagtgagcatttgatgtgtgatatgtgagag |
33061215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 33061166 - 33061124
Alignment:
| Q |
80 |
atagattgagccattattatggtgaactcgaaaaatggccatt |
122 |
Q |
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| T |
33061166 |
atagattgagccattattatggtgaactcgaaaaatggccatt |
33061124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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