View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8532_low_8 (Length: 344)
Name: NF8532_low_8
Description: NF8532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8532_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 20473979 - 20474289
Alignment:
| Q |
25 |
cagaagagtgagtgaaagtggacggtggtgggttagagaagcggcgatgggttcaggacggcagtgg-ctcagaacagcggtggtggttggatatgagta |
123 |
Q |
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| T |
20473979 |
cagaagagtgagttaaagaggacggtggtgggttagagaagcggcgatgggtttaggacggcagtgggctcagaacagcggtggtggttggatatgagta |
20474078 |
T |
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| Q |
124 |
tatgacaaagtatcttctcaagtgatattgaatctcagannnnnnnctcatggtccatgataacataccacataggtacttcttataaaatagtagcacg |
223 |
Q |
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| T |
20474079 |
tatgacaaagtatcttctcaagtgttattgaatctcagatttttttctcatggtccatgataacataccacatacgtacttcttataaaatagtagcacg |
20474178 |
T |
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| Q |
224 |
attcaaggacaaagtatcttctcaagtaatagaaactcttaatgcgatatatactctatctgtttggagtagagaaacaattatggtattcatttgccaa |
323 |
Q |
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| T |
20474179 |
attcaaggacaaagtatcttctcaagtaatagaaactcttaatgcgatatatactctatctgtttggagtagagaaacaattatggtattcatttgccaa |
20474278 |
T |
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| Q |
324 |
ctctttctctg |
334 |
Q |
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||||||||||| |
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| T |
20474279 |
ctctttctctg |
20474289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 5496416 - 5496384
Alignment:
| Q |
250 |
taatagaaactcttaatgcgatatatactctat |
282 |
Q |
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| T |
5496416 |
taatagaaactcttaatgagatatatactctat |
5496384 |
T |
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