View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8533_high_1 (Length: 539)
Name: NF8533_high_1
Description: NF8533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8533_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 42468020 - 42468438
Alignment:
| Q |
1 |
gagttttctatcagtaaatgttgaatcttttatccaagagnnnnnnnngaccagaaaacttcgacacatctgagcaagtaatagctcaataagtatacac |
100 |
Q |
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| T |
42468020 |
gagttttctatcagtaaatgttgaatcttttatccaagagagaaaaaagaccagaaaacttcgacacatctgagcaagtaatagctcaataagcatacac |
42468119 |
T |
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| Q |
101 |
tcattattaatggaaaagacatattgactagtaacaatatatttgtagggatgaaatacataacgaagcttatattattttcatcctgcgtgatgcggat |
200 |
Q |
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| T |
42468120 |
tcattattaatggaaaagacatattgactagta-caatatatttgtagggatgaaatacataatgaagcttatattattttcatcctgcgtgatgcaggt |
42468218 |
T |
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| Q |
201 |
caatatgtagctagcttacgtaattaacaacagaagccaacaattactagatatgtggaaaacaacaaagagtcacacttttattacatcaatttttatt |
300 |
Q |
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| T |
42468219 |
caatatgtagctagcttacataattaacaacagaagccaacaat-------tatgtggaaaacaacaaggagtcacacttttattacatcaatttttatt |
42468311 |
T |
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| Q |
301 |
c-ttaagtatcacagtactggcagcattatgacgattagacagtcataccagtcacggttaattctgttcaggtattattccccgaagagatttccaatt |
399 |
Q |
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| T |
42468312 |
ctttaagtatcacagtactggcagcattatgacgattacacagtcataccagtcacggttaattctgttcaggtattattccccaaagagatttccaatt |
42468411 |
T |
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| Q |
400 |
gtcaagagtttgagtcacaggatacat |
426 |
Q |
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| T |
42468412 |
gtcaagagttcgagtcacaagatacat |
42468438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 421 - 520
Target Start/End: Original strand, 42471130 - 42471222
Alignment:
| Q |
421 |
atacatgtctgttgagcctggaacaaataggacacatgtgttgtattcatctttgaaaaagtatgcttcgttgattttgtgagaggcaaaagctgcatcc |
520 |
Q |
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| T |
42471130 |
atacatgtctgttgagcctggaacaaataggacacatgtgttgtattcatctt-------gtatgcttcattgatcttgtgagaggaaaaagctgcatcc |
42471222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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