View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8533_high_2 (Length: 301)

Name: NF8533_high_2
Description: NF8533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8533_high_2
NF8533_high_2
[»] chr7 (8 HSPs)
chr7 (60-172)||(8015936-8016048)
chr7 (256-293)||(10901731-10901768)
chr7 (256-293)||(46645795-46645832)
chr7 (256-293)||(13702111-13702148)
chr7 (256-293)||(46758328-46758365)
chr7 (257-293)||(34267498-34267534)
chr7 (257-293)||(35835646-35835682)
chr7 (257-293)||(45640039-45640075)
[»] chr3 (11 HSPs)
chr3 (256-293)||(9114097-9114134)
chr3 (256-293)||(25883935-25883972)
chr3 (256-293)||(15085631-15085668)
chr3 (256-293)||(27329879-27329916)
chr3 (256-293)||(41710669-41710706)
chr3 (256-293)||(46767429-46767466)
chr3 (256-293)||(51879181-51879218)
chr3 (261-293)||(3614027-3614059)
chr3 (257-293)||(5636746-5636782)
chr3 (257-293)||(25833909-25833945)
chr3 (256-288)||(41253701-41253733)
[»] chr2 (7 HSPs)
chr2 (256-293)||(32854618-32854655)
chr2 (256-293)||(5947952-5947989)
chr2 (256-293)||(10058955-10058992)
chr2 (256-293)||(15939375-15939412)
chr2 (256-293)||(18862338-18862375)
chr2 (256-288)||(14518370-14518402)
chr2 (256-292)||(25622207-25622243)
[»] chr1 (5 HSPs)
chr1 (256-293)||(34459502-34459539)
chr1 (256-293)||(12613263-12613300)
chr1 (257-293)||(1151846-1151882)
chr1 (257-293)||(7180561-7180597)
chr1 (256-292)||(49907366-49907402)
[»] chr5 (8 HSPs)
chr5 (257-293)||(24250572-24250608)
chr5 (256-293)||(3741040-3741077)
chr5 (256-293)||(3821368-3821405)
chr5 (256-293)||(36564369-36564406)
chr5 (257-293)||(6558888-6558924)
chr5 (256-292)||(18597494-18597530)
chr5 (257-293)||(21918139-21918175)
chr5 (257-293)||(24133043-24133079)
[»] chr8 (9 HSPs)
chr8 (256-293)||(13059124-13059161)
chr8 (256-293)||(13105177-13105214)
chr8 (256-293)||(36035126-36035163)
chr8 (256-293)||(37708777-37708814)
chr8 (256-293)||(44053387-44053424)
chr8 (257-293)||(5328514-5328550)
chr8 (256-292)||(9735789-9735825)
chr8 (257-293)||(21548444-21548480)
chr8 (256-288)||(31024380-31024412)
[»] chr6 (1 HSPs)
chr6 (256-293)||(32621529-32621566)
[»] chr4 (7 HSPs)
chr4 (256-293)||(23176669-23176706)
chr4 (256-293)||(30305885-30305922)
chr4 (256-293)||(36099130-36099167)
chr4 (256-288)||(23142705-23142737)
chr4 (257-293)||(42231599-42231635)
chr4 (257-293)||(48615419-48615455)
chr4 (257-293)||(54029640-54029676)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 60 - 172
Target Start/End: Complemental strand, 8016048 - 8015936
Alignment:
Q  60 gtgtgaaagcgctttttacacgttttatgaattttctcgttggttctagatgcttcttcatttgccaactaggatacgcagaatcatattttacgctttt 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  8016048 gtgtgaaagcgctttttacacgttttatgaattttctcgttggttctagatgcttcttcatttgccaactaggatacccagtatcatattttacgctttt 8015949  T
Q  160 acaacccaaatca 172  Q
    ||||  |||||||    
T  8015948 acaaatcaaatca 8015936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 10901731 - 10901768
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    |||| |||||||||||||||||||||||||||||||||    
T  10901731 tttataatgtgtgagctccagtcactaggctacttgac 10901768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 46645795 - 46645832
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  46645795 tttaaaatgtgtgagctccagtcactaggctacctgac 46645832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 13702111 - 13702148
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  13702111 tttaaaatgtgtgagctccagccactaggctacctgac 13702148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 46758328 - 46758365
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  46758328 tttaaaatgtgtgagctccagccactaggctacctgac 46758365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 34267534 - 34267498
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  34267534 ttaaattgtgtgagctctagtcactaggctacttgac 34267498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 35835682 - 35835646
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  35835682 ttaaattgtgtgagctccagccactaggctacttgac 35835646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 45640075 - 45640039
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  45640075 ttaaattgtgtgagctctagtcactaggctacttgac 45640039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 9114097 - 9114134
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9114097 tttaaaatgtgtgagctccagtcactaggctacttgac 9114134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 25883972 - 25883935
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  25883972 tttaaaatgtgtgagctccagccactaggctacttgac 25883935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 15085668 - 15085631
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  15085668 tttaaaatgtgtgagctccagccactaggctacctgac 15085631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 27329916 - 27329879
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  27329916 tttaaaatgtgtgagctccagccactaggctacctgac 27329879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 41710669 - 41710706
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  41710669 tttaaaatgtgtgagctccagccactaggctacctgac 41710706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 46767429 - 46767466
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  46767429 tttaaaatgtgtgagctccagccactaggctacctgac 46767466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 51879181 - 51879218
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  51879181 tttaaaatgtgtgagctccagccactaggctacctgac 51879218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 3614059 - 3614027
Alignment:
Q  261 aatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||| |||||||||||||||||||||||    
T  3614059 aatgtgtgatctccagtcactaggctacttgac 3614027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 5636782 - 5636746
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  5636782 ttaaattgtgtgagctctagtcactaggctacttgac 5636746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 25833909 - 25833945
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  25833909 ttaaattgtgtgagctctagtcactaggctacttgac 25833945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 41253733 - 41253701
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctac 288  Q
    ||||||||||||||||||||| |||||||||||    
T  41253733 tttaaaatgtgtgagctccagccactaggctac 41253701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 32854618 - 32854655
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  32854618 tttaaaatgtgtgagctccagccactaggctacttgac 32854655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 5947952 - 5947989
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  5947952 tttaaaatgtgtgagctccagccactaggctacctgac 5947989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 10058955 - 10058992
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  10058955 tttaaaatgtgtaagctccagccactaggctacttgac 10058992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 15939375 - 15939412
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  15939375 tttaaaatgtgtgagctccagccactaggctacctgac 15939412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 18862338 - 18862375
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    |||||||||||||||||| || ||||||||||||||||    
T  18862338 tttaaaatgtgtgagctctagccactaggctacttgac 18862375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 14518370 - 14518402
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctac 288  Q
    ||||||||||||||||||||| |||||||||||    
T  14518370 tttaaaatgtgtgagctccagccactaggctac 14518402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 25622243 - 25622207
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttga 292  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  25622243 tttaaaatgtatgagctccagtcactagactacttga 25622207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 34459539 - 34459502
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  34459539 tttaaaatgtgtgagctccggtcactaggctacttgac 34459502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 12613263 - 12613300
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  12613263 tttaaaatgtgtgagctccaatcactaggctgcttgac 12613300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 1151846 - 1151882
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  1151846 ttaaattgtgtgagctctagtcactaggctacttgac 1151882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 7180597 - 7180561
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  7180597 ttaaattgtgtgagctctagtcactaggctacttgac 7180561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 49907366 - 49907402
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttga 292  Q
    |||||||||||||| |||||| |||||||||||||||    
T  49907366 tttaaaatgtgtgaactccagccactaggctacttga 49907402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 24250572 - 24250608
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| |||||||||||||||||||||||||||||||    
T  24250572 ttaaattgtgtgagctccagtcactaggctacttgac 24250608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 3741040 - 3741077
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  3741040 tttaaaatgtgtgagctccagccactaggctacctgac 3741077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 3821405 - 3821368
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  3821405 tttaaaatgtgtgagctccagccactaggctacctgac 3821368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 36564406 - 36564369
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  36564406 tttaaaatgtgtgagctccagtcactatgttacttgac 36564369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 6558888 - 6558924
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  6558888 ttaaattgtgtgagctctagtcactaggctacttgac 6558924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 18597494 - 18597530
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttga 292  Q
    |||||||||||||||||| || |||||||||||||||    
T  18597494 tttaaaatgtgtgagctctagccactaggctacttga 18597530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 21918139 - 21918175
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  21918139 ttaaattgtgtgagctctagtcactaggctacttgac 21918175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 24133043 - 24133079
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  24133043 ttaaattgtgtgagctctagtcactaggctacttgac 24133079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 13059161 - 13059124
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  13059161 tttaaaatgtgtgtgctccagccactaggctacttgac 13059124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 13105177 - 13105214
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    |||||||||||||||||||||||| || ||||||||||    
T  13105177 tttaaaatgtgtgagctccagtcattatgctacttgac 13105214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 36035163 - 36035126
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  36035163 tttaaaatgtgtgagctccagccactaggctacctgac 36035126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 37708777 - 37708814
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  37708777 tttaaaatgtgtgagctccagccactaggctacctgac 37708814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 44053424 - 44053387
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  44053424 tttaaaatgtgtgagctccagccactaggctacctgac 44053387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 5328550 - 5328514
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||| || ||||||||||||||||    
T  5328550 ttaaaatgtgtgagctctagccactaggctacttgac 5328514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 9735789 - 9735825
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttga 292  Q
    |||||||||||||||||| |||||||| |||||||||    
T  9735789 tttaaaatgtgtgagctctagtcactatgctacttga 9735825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 21548480 - 21548444
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||| || ||||||||||||||||    
T  21548480 ttaaaatgtgtgagctctagccactaggctacttgac 21548444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 31024380 - 31024412
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctac 288  Q
    ||||||||||||||||||||| |||||||||||    
T  31024380 tttaaaatgtgtgagctccagccactaggctac 31024412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 32621566 - 32621529
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  32621566 tttaaaatgtgtgagctccagccactaggctacctgac 32621529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 23176706 - 23176669
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  23176706 tttaaaatgtgtgagctccagccactaggctacctgac 23176669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 30305885 - 30305922
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  30305885 tttaaaatgtgtgagctccagccactaggctacctgac 30305922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 36099167 - 36099130
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  36099167 tttaaaatgtgtgagctccagccactaggctacctgac 36099130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 23142737 - 23142705
Alignment:
Q  256 tttaaaatgtgtgagctccagtcactaggctac 288  Q
    ||||||||||||||||||||| |||||||||||    
T  23142737 tttaaaatgtgtgagctccagccactaggctac 23142705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 42231599 - 42231635
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  42231599 ttaaattgtgtgagctctagtcactaggctacttgac 42231635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 48615455 - 48615419
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  48615455 ttaaattgtgtgagctctagtcactaggctacttgac 48615419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 54029640 - 54029676
Alignment:
Q  257 ttaaaatgtgtgagctccagtcactaggctacttgac 293  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  54029640 ttaaattgtgtgagctctagtcactaggctacttgac 54029676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University