View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8533_high_3 (Length: 282)
Name: NF8533_high_3
Description: NF8533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8533_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 34395512 - 34395258
Alignment:
| Q |
20 |
tgattttaagggacagctggaccaaattaaatgtcgtctcaaccatagagacacaagaaggatagatagtgttgagtatcatcatcgttagtcgactcag |
119 |
Q |
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| T |
34395512 |
tgattttaagggacagctggaccaaattaaatgtcgtctcaaccatagagacacaagaaggatagatagtgttgagtatcgtcatcgttagtcgacttag |
34395413 |
T |
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| Q |
120 |
atgggcgtattcggttcaccaaggtgaagctccgaacgacaacacaatgtaagaacagtgttctctatatatttaatcaacatagttcaaagggaccgat |
219 |
Q |
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| T |
34395412 |
atgggcgtattcggttcaccaaggtgaagctccagacgacaacacaatgtaagaactgtgttctctatatatttaatcaacatagttcaaagggaccgat |
34395313 |
T |
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| Q |
220 |
cgacttagatggttctttagttagatatttccaagatattcagaaaagtataatc |
274 |
Q |
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| T |
34395312 |
cgacttagatggttctttagttagatatttccaagatattcagaaaagtttaatc |
34395258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 21304092 - 21304162
Alignment:
| Q |
200 |
catagttcaaagggaccgatcgacttagatggttctttagttagatatttccaagatattcagaaaagtat |
270 |
Q |
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| T |
21304092 |
catagtttgaagggaccgatcgagttaggcgcttccttagtcagatatttctaagatattcaggaaagtat |
21304162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 1918158 - 1918222
Alignment:
| Q |
202 |
tagttcaaagggaccgatcgacttagatggttctttagttagatatttccaagatattcagaaaa |
266 |
Q |
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| T |
1918158 |
tagttcaaagggacttattgagttagatgattcattagttagatctttccaagatattcagaaaa |
1918222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 32210078 - 32210030
Alignment:
| Q |
49 |
aatgtcgtctcaaccatagagacacaagaaggatagatagtgttgagta |
97 |
Q |
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| T |
32210078 |
aatgttgtctcaaccacatagacacaagatggatggatagtgttgagta |
32210030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 16972662 - 16972593
Alignment:
| Q |
33 |
cagctggaccaaattaaatgtcgtctcaaccatagagacacaagaaggatagatagtgttgagtatcatc |
102 |
Q |
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| T |
16972662 |
cagctggaccaaattaatggtcgtctcaaccatagaggcaaaaaaagggtggacattgttgagtatcatc |
16972593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 32420156 - 32420222
Alignment:
| Q |
33 |
cagctggaccaaattaaatgtcgtctcaaccatagagacacaagaaggatagatagtgttgagtatc |
99 |
Q |
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| T |
32420156 |
cagctagaccaaatcaactgtcgactcaaccacatagacacaaggaggatggattgtgttgagtatc |
32420222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 32425997 - 32426063
Alignment:
| Q |
33 |
cagctggaccaaattaaatgtcgtctcaaccatagagacacaagaaggatagatagtgttgagtatc |
99 |
Q |
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| T |
32425997 |
cagctagaccaaatcaactgtcgactcaaccacatagacacaaggaggatggattgtgttgagtatc |
32426063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 40139665 - 40139608
Alignment:
| Q |
209 |
aagggaccgatcgacttagatggttctttagttagatatttccaagatattcagaaaa |
266 |
Q |
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|||||||||||||| ||||||| ||||||||| |||| ||| || || |||||||||| |
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| T |
40139665 |
aagggaccgatcgaattagatgtttctttagtgagattttttcatgaaattcagaaaa |
40139608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 14252370 - 14252431
Alignment:
| Q |
38 |
ggaccaaattaaatgtcgtctcaaccatagagacacaagaaggatagatagtgttgagtatc |
99 |
Q |
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| T |
14252370 |
ggaccaaattaacagtagtctcaaccacaaagacacaagaaggatggacaatgttgagtatc |
14252431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 7492888 - 7492928
Alignment:
| Q |
60 |
aaccatagagacacaagaaggatagatagtgttgagtatca |
100 |
Q |
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||||||||||||||||| ||||| || |||||||||||||| |
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| T |
7492888 |
aaccatagagacacaaggaggatggacagtgttgagtatca |
7492928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 42293811 - 42293879
Alignment:
| Q |
37 |
tggaccaaattaaatgtcgtctcaaccatagagacacaagaaggatagatagtgttgagtatcatcatc |
105 |
Q |
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||||||||||||| |||| |||||||| | ||||||||||| | | || ||||||||||||| ||||| |
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| T |
42293811 |
tggaccaaattaacagtcgactcaaccacaaagacacaagaaaggtggaaagtgttgagtatcgtcatc |
42293879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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