View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8533_high_6 (Length: 221)
Name: NF8533_high_6
Description: NF8533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8533_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 44203041 - 44203211
Alignment:
| Q |
15 |
agcagagacaattaatttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttct |
114 |
Q |
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| T |
44203041 |
agcaaagacaattaatttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttct |
44203140 |
T |
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| Q |
115 |
tttatacacttaaac--------------ctaaattgatactcttatactgctgatgtaaaatgaatgttt |
171 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44203141 |
tttatacacttaaactaggagatataaagctaaattgatactcttatactgctgatgtaaaatgaatgttt |
44203211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 44191759 - 44191873
Alignment:
| Q |
15 |
agcagagacaattaatttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttct |
114 |
Q |
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|||| ||||||||| ||||||||||||||| || |||| ||||||||||||||||||||||||| ||||| ||| || | | |||||||||||||||||| |
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| T |
44191759 |
agcaaagacaattactttattagtaaactcaaagtactttgtcaaatatttgaaccttttcaaactgatgtgaacaatttgctgatgcataatcctttct |
44191858 |
T |
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| Q |
115 |
tttatacacttaaac |
129 |
Q |
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||||||||| ||||| |
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| T |
44191859 |
tttatacacgtaaac |
44191873 |
T |
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