View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8533_low_1 (Length: 1017)
Name: NF8533_low_1
Description: NF8533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8533_low_1 |
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| [»] scaffold0309 (3 HSPs) |
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| [»] scaffold0522 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 444 - 911
Target Start/End: Original strand, 11313057 - 11313524
Alignment:
| Q |
444 |
cctgcacctgttaagcctcctgctccagtcacacctgcacctgtcaagcctcctgtctctattaaacctgctcctgtgaagcctactcctgttaagcctg |
543 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11313057 |
cctgcacctgttaagcctcctgctccagtcacgcctgcacctgtcaagcctcctgtctctattaaacctgctcctgttaagcctactcctgttaagcctg |
11313156 |
T |
|
| Q |
544 |
gcccttttgtgcctaatccaatttctgtccatatccctgttatgcctatacctggtattactgtccctattacacctgcctttgttacgcctcctgccca |
643 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11313157 |
gcccttttgtgcctaatccaatttccgtccatatccctgttatgcctatacctggtattactgtccctattacacctgcctttgttacgcctcctgccca |
11313256 |
T |
|
| Q |
644 |
agttgaccctcatgcccctgtcacgcctgcccctgctgagcctccttcccatgttacactttcccctatcgagccaccgattgttccaacaaaccccctt |
743 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
11313257 |
agttgaccctcatgcccttgtcacgcctgcccctgctgagcctccttcccatgttacactttcccctgtcgagccaccgattattccaacaaaccccctt |
11313356 |
T |
|
| Q |
744 |
gctccggcttacacgccattgccattgcgtctcaatcacatctctagaaaattgatggttgtttaacgtgttttgtcggctcacccagctgccttttagt |
843 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11313357 |
gctctggcttactcgccattgccattgcgtctcaatcacatctctagaaaattgatggttgtttaacgtgttttgtcggctcacccacctgccttttagt |
11313456 |
T |
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| Q |
844 |
gtttaagtcttcattttcactttcgcgtgaaaatatggtgttgagagcctgaactatcaagtttaacc |
911 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11313457 |
gtttaagtcttcgttttcactttcgcgtgaaaatatggtgttgagagcctgaacaatcaagtttaacc |
11313524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 11312538 - 11312785
Alignment:
| Q |
12 |
atggacatcaactcctataaataaagaactctcatgatcactttttcacaacatcccccaacaccaacatcatttccannnnnnnnnnnnnnnnttcaag |
111 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11312538 |
atggacatcaactcctataaataaagaaccctcataatcactttttcacaacatcccccaacaccaacatcatttccactctctctctctctctttcaag |
11312637 |
T |
|
| Q |
112 |
gttacatcgtcttacatagaaaaatgggaaattttttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaac |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11312638 |
gttacatcgtcttacatagaaaaatgggaaattttttagcattgttgatgctcatactccaactaacctttttcactccatttgctgaagagtttgaaac |
11312737 |
T |
|
| Q |
212 |
aactcttcaagaacttgatgcttttaagccttcggttcctgttaagcc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11312738 |
aactcttcaagaacttgatgcttttaagccttcggttcctgttaagcc |
11312785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 954 - 1002
Target Start/End: Original strand, 11313567 - 11313615
Alignment:
| Q |
954 |
gcttgaattatcaatagtaatttaagagtgacattatatatgtgtaatt |
1002 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11313567 |
gcttgaattatcaatagaaatttaagagtgacattatatatgtgtaatt |
11313615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 516 - 639
Target Start/End: Original strand, 4185 - 4311
Alignment:
| Q |
516 |
cctgtgaagcctactcctgttaagcctggcccttttgtgcctaatccaatttctgtccatatccc---tgttatgcctatacctggtattactgtcccta |
612 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||| ||||||||||||||||| | || |||| |||||||||| | |||| || | ||||||||| |
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| T |
4185 |
cctgttaagcctgctcctgttaagcctagcccttttatgcctaatccaatttctattgatgtccctgttgttatgcctgtccctgttaatcctgtcccta |
4284 |
T |
|
| Q |
613 |
ttacacctgcctttgttacgcctcctg |
639 |
Q |
| |
|
||||||| || ||||||||||||||| |
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| T |
4285 |
ttacacccacccttgttacgcctcctg |
4311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 3826 - 3919
Alignment:
| Q |
145 |
ttttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaa |
238 |
Q |
| |
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|||| ||| ||||| ||||| ||||||||||| | ||||||||| ||||| ||||||||||||| ||| ||||| | |||||||||| |||||| |
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| T |
3826 |
tttttgcactgttgctactcctactccaactagcatttttcacttcatttactgaagagtttgatacagctctttacgaacttgatggttttaa |
3919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 838 - 903
Target Start/End: Original strand, 4556 - 4621
Alignment:
| Q |
838 |
tttagtgtttaagtcttcattttcactttcgcgtgaaaatatggtgttgagagcctgaactatcaa |
903 |
Q |
| |
|
||||||||||| ||||| || |||||||||| ||||||||||||||||| ||| || |||||||| |
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| T |
4556 |
tttagtgtttaggtcttgatattcactttcgtgtgaaaatatggtgttgtgagattgtactatcaa |
4621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 21471492 - 21471585
Alignment:
| Q |
145 |
ttttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaa |
238 |
Q |
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|
|||| ||| ||||| |||| ||||||||||| | ||||||||| ||||||||||||||||||||||| ||||| | |||||||||| |||||| |
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|
| T |
21471492 |
tttttgcactgttgctacttttactccaactaccatttttcacttcatttgctgaagagtttgaaacagctctttacgaacttgatggttttaa |
21471585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 838 - 903
Target Start/End: Original strand, 21472239 - 21472304
Alignment:
| Q |
838 |
tttagtgtttaagtcttcattttcactttcgcgtgaaaatatggtgttgagagcctgaactatcaa |
903 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||| || |||||||| |
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| T |
21472239 |
tttagtgtttaggtcttgattttcactttcgtgtgaaaatatggtgttgtgagcttgtactatcaa |
21472304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 516 - 642
Target Start/End: Original strand, 21471869 - 21471998
Alignment:
| Q |
516 |
cctgtgaagcctactcctgttaagcctggcccttttgtgcctaatccaatttctgtccatatccc---tgttatgcctatacctggtattactgtcccta |
612 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||| |||||||||||||||| | || |||| |||||||||| | | || | | |||||||| |
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|
| T |
21471869 |
cctgttaagcctgctcctgttaagcctagcccttttacgcctaatccaatttctattgatgtccctgttgttatgcctgtccttgttgatcatgtcccta |
21471968 |
T |
|
| Q |
613 |
ttacacctgcctttgttacgcctcctgccc |
642 |
Q |
| |
|
||||||| || |||||||||||||||||| |
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|
| T |
21471969 |
ttacacccacccttgttacgcctcctgccc |
21471998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 1192 - 1108
Alignment:
| Q |
154 |
tgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaa |
238 |
Q |
| |
|
||||| ||||| ||||||||||| | ||||||||| ||||||||||||||||||| ||| ||||| | |||||||||| |||||| |
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|
| T |
1192 |
tgttgctactcttactccaactagcatttttcacttcatttgctgaagagtttgacacagctctttacgaacttgatggttttaa |
1108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 838 - 903
Target Start/End: Complemental strand, 468 - 403
Alignment:
| Q |
838 |
tttagtgtttaagtcttcattttcactttcgcgtgaaaatatggtgttgagagcctgaactatcaa |
903 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||| |||||| |||| || |||||||| |
|
|
| T |
468 |
tttagtgtttaggtcttgattttcactttcatgtgaaaatatcgtgttgtgagcttgtactatcaa |
403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 19262847 - 19262750
Alignment:
| Q |
147 |
ttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaagccttc |
244 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||||||||||||| ||||||| |||||| ||||||| ||||| | ||| | ||| |||||||||||| |
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|
| T |
19262847 |
ttagcattgttgttactcttacttcaactaacctttttcactacatttgcggaagagcttgaaaccgctctttacaaaccttatggttttaagccttc |
19262750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 536 - 642
Target Start/End: Original strand, 2664848 - 2664957
Alignment:
| Q |
536 |
taagcctggcccttttgtgcctaatccaatttctgtccatatccct---gttatgcctatacctggtattactgtccctattacacctgcctttgttacg |
632 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||| || ||||| |||||||| || |||| || | ||||||||||||| |||| | ||||||| |
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| T |
2664848 |
taagcctggcctttttaggcctaatccaatttccgtcgatgtccctattgttatgcccattcctgttactcctgtccctattacgcctgtcgttgttact |
2664947 |
T |
|
| Q |
633 |
cctcctgccc |
642 |
Q |
| |
|
|||||||||| |
|
|
| T |
2664948 |
cctcctgccc |
2664957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 833 - 896
Target Start/End: Original strand, 2665396 - 2665459
Alignment:
| Q |
833 |
tgccttttagtgtttaagtcttcattttcactttcgcgtgaaaatatggtgttgagagcctgaa |
896 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
2665396 |
tgccttttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttgaaagcttgaa |
2665459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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